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January 14, 2021 10:32AM
Thank you! I have been able to get my post-fmriprep processing pipeline to work well. However, now I have a related question. I am using 3Dclusterize to list clusters over a certain threshold, and I would like to list them in MNI space. I have read on another thread (https://afni.nimh.nih.gov/afni/community/board/read.php?1,161972,161980) that 3dclusterize is supposed to know whether your data are in MNI or Talairach space. Because I did first and second level processing in AFNI, my data files have the suffix _tlrc, but they were registered by fmriprep in MNI space. 3Dclusterize is printing out Talairach space coordinates. Is there a way for me to directly tell 3dclusterize that these data are actually in MNI space? Thanks in advance for your help!
Subject Author Posted

fmriprep to afni_proc.py?

dani2 January 04, 2021 02:13PM

Re: fmriprep to afni_proc.py?

ptaylor January 05, 2021 09:19AM

Re: fmriprep to afni_proc.py?

dani2 January 05, 2021 01:10PM

Re: fmriprep to afni_proc.py?

Peter Molfese January 05, 2021 09:56PM

Re: fmriprep to afni_proc.py?

dani2 January 14, 2021 10:32AM

Re: fmriprep to afni_proc.py?

ptaylor January 14, 2021 11:51AM

Re: fmriprep to afni_proc.py?

MXD2019 June 16, 2021 02:20PM

Re: fmriprep to afni_proc.py?

ptaylor June 16, 2021 04:05PM



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