AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 14, 2021 10:32AM
Thank you! I have been able to get my post-fmriprep processing pipeline to work well. However, now I have a related question. I am using 3Dclusterize to list clusters over a certain threshold, and I would like to list them in MNI space. I have read on another thread (https://afni.nimh.nih.gov/afni/community/board/read.php?1,161972,161980) that 3dclusterize is supposed to know whether your data are in MNI or Talairach space. Because I did first and second level processing in AFNI, my data files have the suffix _tlrc, but they were registered by fmriprep in MNI space. 3Dclusterize is printing out Talairach space coordinates. Is there a way for me to directly tell 3dclusterize that these data are actually in MNI space? Thanks in advance for your help!
Subject Author Posted

fmriprep to afni_proc.py?

dani2 January 04, 2021 02:13PM

Re: fmriprep to afni_proc.py?

ptaylor January 05, 2021 09:19AM

Re: fmriprep to afni_proc.py?

dani2 January 05, 2021 01:10PM

Re: fmriprep to afni_proc.py?

Peter Molfese January 05, 2021 09:56PM

Re: fmriprep to afni_proc.py?

dani2 January 14, 2021 10:32AM

Re: fmriprep to afni_proc.py?

ptaylor January 14, 2021 11:51AM

Re: fmriprep to afni_proc.py?

MXD2019 June 16, 2021 02:20PM

Re: fmriprep to afni_proc.py?

ptaylor June 16, 2021 04:05PM