Hello,
I am having a problem running @SUMA_AlignToExperiment - this worked for me yesterday. When I run @SUMA_AlignToExperiment, I get the following error:
set: Variable name must contain alphanumeric characters.
I have @SUMA_AlignToExperiment written into the script generated by afni_proc.py. Even when I try @SUMA_AlignToExperiment by itself outside of the script, I get the same error. I even tried updating my AFNI binaries. I tried to rerun @SUMA_AlignToExperiment on the dataset that I ran yesterday, and the same error occurred.
# ======================= surf (map data to surface) =======================
# map EPI data to the surface domain
# set directory variables
set surface_dir = /Users/sxa308/Box Sync/101/repreprocess_w_surf
# align the surface anatomy with the current experiment anatomy
@SUMA_AlignToExperiment -exp_anat anat_final.$subj+orig \
-surf_anat $surface_dir/101_SurfVol+orig \
-wd -strip_skull surf_anat \
-atlas_followers -overwrite_resp S \
-prefix ${subj}_SurfVol_Alnd_Exp