AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 14, 2022 10:58AM
Hi experts,

I am trying to save images with following codes and get following error messages. Could you please help to have a look? Many thanks in advance!!
setenv AFNI_NOSPLASH YES
setenv AFNI_SPLASH_MELT NO
setenv AFNI_PBAR_GULLRANGE NO
setenv AFNI_SKIP_DYLD_WARNING YES
afni -yesplugouts $anat $func_glt \
    -com 'SWITCH_UNDERLAY $anat' \
    -com 'SEE_OVERLAY +' \
    -com 'SWITCH_OVERLAY $func_glt' \
    -com 'SET_SUBBRICKS 0 8 9' \
    -com 'OPEN_WINDOW axialimage mont=3x3:11 opacity=6' \
    -com 'OPEN_WINDOW sagittalimage mont=3x3:14 opacity=6' \
    -com 'OPEN_WINDOW coronalimage mont=3x3:17 opacity=6' \
    -com 'SET_XHAIRS OFF' \
    -com 'SET_DICOM_XYZ 0 0 0' \
    -com 'SET_THRESHNEW 0.05 *p' \
    -com 'SET_PBAR_ALL -99 1 Reds_and_Blues_Inv' \
    -com 'SET_FUNC_RANGE 0.005' \
    -com 'SAVE_PNG axialimage Aud_Aget_axi_0.005.png blowup=2' \
    -com 'SAVE_PNG sagittalimage Aud_Aget_sag_0.005.png blowup=2' \
    -com 'SAVE_PNG coronalimage  Aud_Aget_cor_0.005.png blowup=2'

Quote

Precompiled binary macos_10.12_local: Jan 31 2022 (Version AFNI_22.0.04 'Hadrian')


** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to MM Klosek for advice and help

Initializing: X11[The X.Org Foundation v 12011000].. Widgets.
Fatal Signal 11 (SIGSEGV) received
Last STATUS: making imag->rowcol
AFNI_make_wid1
AFNI_make_widgets
new_AFNI_controller
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_22.0.04 Compile date = Jan 31 2022
** [[Precompiled binary macos_10.12_local: Jan 31 2022]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/xiyuezh/.afni.crashlog
++ AFNI is detached from terminal.
Subject Author Posted

Saving images with command lines

xiyuezh June 14, 2022 10:58AM

Re: Saving images with command lines

rick reynolds June 14, 2022 11:09AM

Re: Saving images with command lines

ptaylor June 14, 2022 11:43AM

Re: Saving images with command lines

xiyuezh June 20, 2022 04:11PM

Re: Saving images with command lines

xiyuezh June 20, 2022 04:11PM

Re: Saving images with command lines

ptaylor June 20, 2022 05:27PM