AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 05, 2021 08:03AM
Hi Rick,

Thanks again for helping with this issue.

I uninstalled XQuartz and reinstalled it (version 2.8.0). The libXp files are still not found. When running 'suma -update_env', here is what I get:

bash-3.2$ suma -update_env
dyld: Library not loaded: /opt/X11/lib/libXp.6.dylib
Referenced from: /Users/claudie/abin/suma
Reason: image not found
Abort trap: 6


Of note, I do not have X11 on this path: 'Applications/Utilities/X11.app', only XQuartz.app.

There are also several other weird things happening. Even though I set my Terminal in bash by default (confirmed when typing echo $0), here is what I get when trying the suma -update_env command:

(base) Claudies-MBP:~ claudie$ afni_system_check.py -check_all
-bash: afni_system_check.py: command not found


(base) Claudies-MBP:~ claudie$ suma -update_env
-bash: suma: command not found


In order to get it working, I have usually to type bash again, while it should be already in bash environment.

I have have no idea how to circumvent/fix this bunch of issues.

Many thanks,

Claudie
Subject Author Posted

Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard February 28, 2021 10:46AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 02, 2021 01:46PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard March 02, 2021 07:53PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 03, 2021 03:37PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard March 04, 2021 08:06AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 04, 2021 09:49AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard March 05, 2021 08:03AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 05, 2021 03:26PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard March 08, 2021 08:18AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Valerie March 05, 2021 03:30PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Zobair March 09, 2021 07:31AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 13, 2021 02:06PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 13, 2021 03:05PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

cmcnabb March 15, 2021 04:38PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

rick reynolds March 16, 2021 12:50PM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

ruben.nechifor March 23, 2021 05:25AM

Re: Trouble when installing AFNI with macOS Big Sur (version 11.2)

Claudie Gaillard March 25, 2021 08:18AM