AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
March 09, 2021 11:49AM
Hi Carolyn,

Pass the motion file using -regress_motion_file. As Peter notes, otherwise, AP does not have any file to apply for motion.

Another option is to consider adding an 'empty' block (to the -blocks list) to a complete AP command.
The resulting proc script would apply 3dcopy in the empty block, which you could replace with your wavelets despiking command.

- rick
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Subject Author Posted

running only regress block with -regress_apply_mot_types demean deriv

carolin31 March 08, 2021 05:15PM

Re: running only regress block with -regress_apply_mot_types demean deriv

Peter Molfese March 09, 2021 11:37AM

Re: running only regress block with -regress_apply_mot_types demean deriv

rick reynolds March 09, 2021 11:49AM

Re: running only regress block with -regress_apply_mot_types demean deriv

carolin31 March 09, 2021 08:40PM