Hi,
I am running proc.py for 7T multi-echo data and I don't get an output of the QC HTML file.
I will very much appreciate your help in understanding how to fix it.
attached is my proc.py script:
afni_proc.py \
-subj_id $subject.$session.$scan.ME.blur \
-blocks despike tshift align tlrc volreg blur mask combine scale \
-radial_correlate_blocks tcat volreg \
-blip_forward_dset $subject.$session.AP.ME+orig.HEAD \
-blip_reverse_dset $subject.$session.PA.ME+orig.HEAD \
-copy_anat anatSS.$subject.$session.$scan.ME.nii \
-anat_has_skull no \
-dsets_me_run $subject.$session.$scan.ME_00?+orig.HEAD \
-echo_times 13.2 34.72 56.24 \
-reg_echo 2 \
-tcat_remove_first_trs 4 \
-tshift_interp -wsinc9 \
-align_opts_aea -cost lpc+ZZ -giant_move \
-tlrc_base MNI152_2009_template_SSW.nii.gz \
-tlrc_NL_warp \
-tlrc_NL_warped_dsets anatQQ.$subject.$session.$scan.ME.nii anatQQ.$subject.$session.$scan.ME.aff12.1D anatQQ.$subject.$session.$scan.ME_WARP.nii \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-blur_size 4 \
-mask_epi_anat yes \
-combine_method tedana \
-html_review_style pythonic \
-scr_overwrite
tcsh -xef proc.$subject.$session.$scan.ME.blur 2>&1 | tee output.proc.$subject.$session.$scan.ME.blur
Thank you in advance!
Maya