AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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gang
March 25, 2021 07:48AM
Carolin,

> Maybe -rout does not output the R^2 stats for the error in resting state?

Indeed by default R^2 would not be provided for those regressors of no interest. Conceptually at least two issues seem to be involved: 1) remove the default option -nobout from the 3dDeconvolve command, and 2) bundle those regressors of no interest so that you would obtain the overall R^2. I'm not well-versed as to how to address the issues within the framework of afni_proc.py. Hope someone else will chip in and provide a solution.

Gang
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Subject Author Posted

How to get R^2 stats using afni_proc.py (resting state and 3dREMLfit)?

carolin31 March 18, 2021 01:57PM

Re: How to get R^2 stats using afni_proc.py (resting state and 3dREMLfit)?

gang March 21, 2021 09:05PM

Re: How to get R^2 stats using afni_proc.py (resting state and 3dREMLfit)?

carolin31 March 23, 2021 03:34PM

Re: How to get R^2 stats using afni_proc.py (resting state and 3dREMLfit)?

gang March 25, 2021 07:48AM