AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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kyrieamara
March 22, 2021 05:24PM
it does, PCLTotal should be a different value for each time point. Here is a clip of my data table.
Note: I had changed the variable names in the original post for simplicity's sake, so that is not the issue. Also there are 121 subjects, but this is just a portion:

Subj Time Gender Racial_Category age2wk PCLTotal_Both Input.File \
2 1 1 4 24.8 35 REST/results/firstlevel/allsubs_ICC/BETA_Subject002_Condition001_Measure002_Component001.nii \
2 2 1 4 24.8 24 REST/results/firstlevel/allsubs_ICC/BETA_Subject002_Condition003_Measure002_Component001.nii \
3 1 1 5 20.9 51 REST/results/firstlevel/allsubs_ICC/BETA_Subject003_Condition001_Measure002_Component001.nii \
3 2 1 5 20.9 46 REST/results/firstlevel/allsubs_ICC/BETA_Subject003_Condition003_Measure002_Component001.nii \
5 1 0 4 25.6 49 REST/results/firstlevel/allsubs_ICC/BETA_Subject005_Condition001_Measure002_Component001.nii \
5 2 0 4 25.6 37 REST/results/firstlevel/allsubs_ICC/BETA_Subject005_Condition003_Measure002_Component001.nii \


I am curious, is the issue that I am trying to use the beta maps from CONN as the input files? I had originally ran this ICC (intrinsic connectivity contrast) in CONN with the intention of completing the LME in AFNI; however, maybe this is messing with the model.
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Subject Author Posted

3dLME Model Error / Script Crashing

kyrieamara March 18, 2021 10:34PM

Re: 3dLME Model Error / Script Crashing

gang March 19, 2021 10:41AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 20, 2021 01:16PM

Re: 3dLME Model Error / Script Crashing

gang March 21, 2021 08:46PM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 22, 2021 05:24PM

Re: 3dLME Model Error / Script Crashing

gang March 23, 2021 08:40AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 23, 2021 10:54AM

Re: 3dLME Model Error / Script Crashing

gang March 23, 2021 11:31AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 23, 2021 02:49PM