AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 22, 2021 12:35PM
The align_epi_anat.py program should give you an output 3D/4D dataset and 1D files for the affine transformations too. In this case, you are asking for the output to be the aligned anatomical dataset, so you should find that single volume dataset called something like "anatal_junk+orig.HEAD/BRIK" in the output. The AFNI format is used for the output instead of NIFTI. You can convert that to NIFTI with 3dcopy. Note the anatomical to EPI transformation is the default and the first one computed. If you really want the reverse, then use "-epi2anat" instead of "-anat2epi".
Subject Author Posted

align_epi_anat.py output 4D

ikbeneeneric March 22, 2021 08:48AM

Re: align_epi_anat.py output 4D

ptaylor March 22, 2021 09:23AM

Re: align_epi_anat.py output 4D

ikbeneeneric March 22, 2021 09:47AM

Re: align_epi_anat.py output 4D

ptaylor March 22, 2021 10:07AM

Re: align_epi_anat.py output 4D

ikbeneeneric March 22, 2021 10:24AM

Re: align_epi_anat.py output 4D

Daniel Glen March 22, 2021 12:35PM

Re: align_epi_anat.py output 4D

ikbeneeneric March 25, 2021 03:32AM

Re: align_epi_anat.py output 4D

ikbeneeneric March 25, 2021 05:45AM