AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 29, 2021 01:59PM
Hi, Tracy-

Preliminary note:
+ 3dresample is generally to use when the data and their header information are both correct. This program can then be used to change the data+header together.
+ 3drefit is generally to use when something in the header information is *wrong*, and you want to change just the header (fixing a value), to match with the data.

Can you please list what you would like to change, and whether you view it as currently *correct* or *wrong* in your current data?

Also, is your data oblique? What is the output of:
3dinfo -is_oblique DATASET
for each *original* dataset (before resampling or refitting)?

Note that "3dresample -dxyz A B C ..." will just change the voxel size, not the orientation.

Re. the 2nd command: I don't see an option "-epan" in 3dreft's help, so I'm not sure what that is.

--pt
Subject Author Posted

how to change orientation infomation in head file but keep the oritation of image Attachments

Tracy_AFNI March 29, 2021 01:12PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor March 29, 2021 01:59PM

Re: how to change orientation infomation in head file but keep the oritation of image

Daniel Glen March 29, 2021 02:54PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI March 31, 2021 11:20PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI March 31, 2021 11:18PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor March 31, 2021 11:24PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI April 01, 2021 06:22PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor April 02, 2021 10:39AM