AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 31, 2021 11:18PM
Hi, Ptaylor,
Thanks for your reply!

I ran the script what your suggested and got the followed result:
3dinfo -is_oblique mag_res_brain.nii.gz
0
3dinfo -is_oblique CEST_res_brain.nii.gz
0

I tried other way to rotate the mag to match the CEST orientation, then align mag to CEST with 3dresample -master CEST.nii -prefix mag_to_CEST.nii -inset mag.nii, is this right one to align mag to CEST image?

Thanks!
Subject Author Posted

how to change orientation infomation in head file but keep the oritation of image Attachments

Tracy_AFNI March 29, 2021 01:12PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor March 29, 2021 01:59PM

Re: how to change orientation infomation in head file but keep the oritation of image

Daniel Glen March 29, 2021 02:54PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI March 31, 2021 11:20PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI March 31, 2021 11:18PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor March 31, 2021 11:24PM

Re: how to change orientation infomation in head file but keep the oritation of image

Tracy_AFNI April 01, 2021 06:22PM

Re: how to change orientation infomation in head file but keep the oritation of image

ptaylor April 02, 2021 10:39AM