AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 31, 2021 11:11AM
Versions of relevant programs:
- MacOS 10.15.7 "Catalina" (I know, I know...)
- AFNI 2021-03-24
- Xquartz 2.8.0

In one terminal, with the following environment variable modifications:
export AFNI_REALTIME_Registration=3D:_realtime
export AFNI_REALTIME_Base_Image=2
export AFNI_REALTIME_Graph=Realtime
export AFNI_REALTIME_MP_HOST_PORT=localhost:53214
export AFNI_REALTIME_SEND_VER=YES
export AFNI_REALTIME_SHOW_TIMES=YES
export AFNI_REALTIME_Mask_Vals=ROI_means
export AFNI_REALTIME_Function=FIM
I launch `afni -rt`, which successfully loads the standard AFNI viewer.
In a separate terminal, I run
`rtfeedme FILE`
and no matter what I file I send, I receive the following error message:

++++++++ IMAGE SAVE SETUP WARNINGS ++++++++
++ Can't find program ffmpeg for Save to MPEG-1
++ To disable these warnings, set environment
++ variable AFNI_IMSAVE_WARNINGS to 'NO'.
+++++++++++++++++++++++++++++++++++++++++++++
. Widgets...... Input files:+/Users/tevesjb/AFNI
session # 1 = tevesjb/AFNI/ ==> 54 datasets
dataset count = 54
Time series = 0 files read
.[tc]sv data = 4 files read
Path(s) to be searched for plugins:
/Users/tevesjb/AFNI /Users/tevesjb/AFNI/../lib
++ AFNI is detached from terminal.
(base) tevesjb@MH02217074MACLT AFNI % -- no T2star_ref from env

Plugins = 49 libraries read
RT: AFNI realtime plugin is active; cf. README.realtime document
RT: starting to listen for control stream.

++ NOTE: This version of AFNI was built Mar 24 2021 ++
++ NOTE: 'Define Markers' is hidden: right-click 'DataDir' to see it
++ NOTE: Use '-seehidden' option to see which plugins are hidden
RT:---------------------------------------
RT: connected to control stream 127.0.0.1
RT: version 23 Jan 2020: ROIs_and_data
RT: init RT input via control channel
RT: waiting for data stream to become good.
RT: receiving image metadata=164 bytes
RT TIME (starting to receive realtime data): 2261 sec, 175 ms (0 ms passed)
## PARSE RT Detrend: RT Options mode 0x0 polort -1 fwhm 0
Has shared memory buffer gone bad? shm_nattach[shmctl]: Invalid argument
RT: finish channel 01 with 1 bricks completed.
RT: cpu time = 0.02 elapsed time = 0.29
RT: sending dataset rt.__001+orig with 1 bricks
to AFNI[A], session /Users/tevesjb/AFNI/

Fatal Signal 11 (SIGSEGV) received
AFNI_autorange_label
AFNI_reset_func_range
AFNI_setup_viewing
AFNI_initialize_view
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_21.0.21 Compile date = Mar 24 2021
** [[Precompiled binary macos_10.12_local: Mar 24 2021]]

Additional notes:
I checked previous notes, and saw that DYLD_LIBRARY_PATH can be an issue, so I double-checked that environment variable:
:/opt/X11/lib/flat_namespace

Any ideas what might be going on?
Subject Author Posted

SIGSEV error when trying to use rtfeedme

jbteves March 31, 2021 11:11AM

Re: SIGSEV error when trying to use rtfeedme

RWCox April 01, 2021 01:13PM

Re: SIGSEV error when trying to use rtfeedme

jbteves April 06, 2021 04:36PM

Re: SIGSEV error when trying to use rtfeedme

rick reynolds April 08, 2021 07:24PM

Re: SIGSEV error when trying to use rtfeedme

jbteves April 09, 2021 10:22AM

Re: SIGSEV error when trying to use rtfeedme

rick reynolds April 09, 2021 12:08PM

Re: SIGSEV error when trying to use rtfeedme

jbteves April 14, 2021 02:43PM

Re: SIGSEV error when trying to use rtfeedme

jbteves May 10, 2021 04:17PM

Re: SIGSEV error when trying to use rtfeedme

jbteves May 11, 2021 12:32PM