Hello,
I have a second level script (the spacing is correct in the actual file):
3dMVM -prefix MJ_MVM1 -jobs 64 \
-bsVars 'Use*Age+WRAT' \
-wsVars 'contrasts' \
-qVars 'Age,WRAT' \
-qVarCenters '25.85,97.85' \
-num_glt 2 \
-gltLabel 1 WvsL_hvy_vs_low -gltCode 1 'Use : 1*Heavy -1*Low contrasts : 1*WvsL' \
-gltLabel 2 RvsS_hvy_vs_low -gltCode 2 'Use : 1*Heavy -1*Low contrasts : 1*RvsS' \
-dataTable \
Subj Use Age WRAT contrasts InputFile \
2866_02 Heavy 28 99 WvsL stats.MJ_2866_02_REML+tlrc'[16]' \
2866_02 Heavy 28 99 RvsS stats.MJ_2866_02_REML+tlrc'[19]' \
3317_03 Heavy 29 111 WvsL stats.MJ_3317_03_REML+tlrc'[16]' \
3317_03 Heavy 29 111 RvsS stats.MJ_3317_03_REML+tlrc'[19]' \
7121_04 Heavy 26 88 WvsL stats.MJ_7121_04_REML+tlrc'[16]' \
7121_04 Heavy 26 88 RvsS stats.MJ_7121_04_REML+tlrc'[19]' \
3589_05 Heavy 27 94 WvsL stats.MJ_3589_05_REML+tlrc'[16]' \
3589_05 Heavy 27 94 RvsS stats.MJ_3589_05_REML+tlrc'[19]' \
3604_07 Low 23 89 WvsL stats.MJ_3604_07_REML+tlrc'[16]' \
3604_07 Low 23 89 RvsS stats.MJ_3604_07_REML+tlrc'[19]' \
2837_08 Low 30 96 WvsL stats.MJE_2837_08_REML+tlrc'[16]' \
2837_08 Low 30 96 RvsS stats.MJE_2837_08_REML+tlrc'[19]' \
7389_10 Low 25 80 WvsL stats.MJ_7389_10_REML+tlrc'[16]' \
7389_10 Low 25 80 RvsS stats.MJ_7389_10_REML+tlrc'[19]' \
1060_12 Low 22 71 WvsL stats.MJ_1060_12_REML+tlrc'[16]' \
1060_12 Low 22 71 RvsS stats.MJ_1060_12_REML+tlrc'[19]' \
2865_13 Low 25 69 WvsL stats.MJ_2865_13_REML+tlrc'[16]' \
2865_13 Low 25 69 RvsS stats.MJ_2865_13_REML+tlrc'[19]' \
1100_14 Heavy 23 85 WvsL stats.MJ_1100_14_REML+tlrc'[16]' \
1100_14 Heavy 23 85 RvsS stats.MJ_1100_14_REML+tlrc'[19]' \
1218_15 Heavy 23 73 WvsL stats.MJ_1218_15_REML+tlrc'[16]' \
1218_15 Heavy 23 73 RvsS stats.MJ_1218_15_REML+tlrc'[19]' \
1310_16 Low 31 90 WvsL stats.MJ_1310_16_REML+tlrc'[16]' \
1310_16 Low 31 90 RvsS stats.MJ_1310_16_REML+tlrc'[19]' \
3200_17 Low 29 96 WvsL stats.MJ_3200_17_REML+tlrc'[16]' \
3200_17 Low 29 96 RvsS stats.MJ_3200_17_REML+tlrc'[19]' \
2099_18 Heavy 24 106 WvsL stats.MJ_2099_18_REML+tlrc'[16]' \
2099_18 Heavy 24 106 RvsS stats.MJ_2099_18_REML+tlrc'[19]' \
2164_19 Heavy 24 97 WvsL stats.MJ_2164_19_REML+tlrc'[16]' \
2164_19 Heavy 24 97 RvsS stats.MJ_2164_19_REML+tlrc'[19]' \
2079_20 Low 23 85 WvsL stats.MJ_2079_20_REML+tlrc'[16]' \
2079_20 Low 23 85 RvsS stats.MJ_2079_20_REML+tlrc'[19]' \
021 Low 28 145 WvsL stats.MJ_021_REML+tlrc'[16]' \
021 Low 28 145 RvsS stats.MJ_021_REML+tlrc'[19]' \
022 Heavy 27 96 WvsL stats.MJ_022_REML+tlrc'[16]' \
022 Heavy 27 96 RvsS stats.MJ_022_REML+tlrc'[19]' \
024 Low 24 84 WvsL stats.MJ_024_REML+tlrc'[16]' \
024 Low 24 84 RvsS stats.MJ_024_REML+tlrc'[19]' \
025 Heavy 29 86 WvsL stats.MJ_025_REML+tlrc'[16]' \
025 Heavy 29 86 RvsS stats.MJ_025_REML+tlrc'[19]' \
026 Heavy 25 90 WvsL stats.MJ_026_REML+tlrc'[16]' \
026 Heavy 25 90 RvsS stats.MJ_026_REML+tlrc'[19]' \
028 Heavy 25 75 WvsL stats.MJ_028_REML+tlrc'[16]' \
028 Heavy 25 75 RvsS stats.MJ_028_REML+tlrc'[19]' \
030 Heavy 23 145 WvsL stats.MJ_030_REML+tlrc'[16]' \
030 Heavy 23 145 RvsS stats.MJ_030_REML+tlrc'[19]' \
032 Heavy 22 96 WvsL stats.MJ_032_REML+tlrc'[16]' \
032 Heavy 22 96 RvsS stats.MJ_032_REML+tlrc'[19]' \
033 Heavy 24 93 WvsL stats.MJ_033_REML+tlrc'[16]' \
033 Heavy 24 93 RvsS stats.MJ_033_REML+tlrc'[19]' \
034 Low 28 145 WvsL stats.MJ_034_REML+tlrc'[16]' \
034 Low 28 145 RvsS stats.MJ_034_REML+tlrc'[19]' \
035 Heavy 28 98 WvsL stats.MJ_035_REML+tlrc'[16]' \
035 Heavy 28 98 RvsS stats.MJ_035_REML+tlrc'[19]' \
036 Low 24 96 WvsL stats.MJ_036_REML+tlrc'[16]' \
036 Low 24 96 RvsS stats.MJ_036_REML+tlrc'[19]' \
037 Low 26 95 WvsL stats.MJ_037_REML+tlrc'[19]' \
037 Low 26 95 RvsS stats.MJ_037_REML+tlrc'[19]' \
038 Low 26 132 WvsL stats.MJ_038_REML+tlrc'[19]' \
038 Low 26 132 RvsS stats.MJ_038_REML+tlrc'[19]' \
039 Low 24 121 WvsL stats.MJ_039_REML+tlrc'[19]' \
039 Low 24 121 RvsS stats.MJ_039_REML+tlrc'[19]' \
040 Low 29 132 WvsL stats.MJ_040_REML+tlrc'[19]' \
040 Low 29 132 RvsS stats.MJ_040_REML+tlrc'[19]' \
041 Low 28 121 WvsL stats.MJ_041_REML+tlrc'[19]' \
041 Low 28 121 RvsS stats.MJ_041_REML+tlrc'[19]'
that is pausing right after the snow package is loaded.
Reading input files now...
Reading input files: Done!
Range of input data: [-586.249, 602.529]
If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.
[1] "Great, test run passed at voxel (21, 38, 32)!"
[1] "Start to compute 64 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "04/07/21 15:28:53.134"
Loading required package: snow
Package snow loaded successfully!
This is odd, in my experience usually at this point the script will either continue to run or will be killed. I am using openmpi, and have tried various very large memory configurations, so I don't believe it is a compute error. Do you have any idea why it might be pausing here? It has been like this for over an hour.
Thank you,
Mikey
