Hi

please could you help me - I am try to run 3dDeconvolve (command pasted below) with -stim_times_AM2 option but getting an error reading the stimuli file (see below). I have copied the contents of the stimulus file at the end. I also tried using file_tool seeing what Rick said to someone else in another thread but didnt shed any light (pasted output below).

Thanks for any advice

Sincerely

Prerona


** ERROR: mri_read_ascii_ragged_fvect: couldn't open file stimuli/CG1362_choiceT1_sam8apr21
** FATAL ERROR: '-stim_times_AM2 1' can't read file 'stimuli/CG1362_choiceT1_sam8apr21' [nopt=17]
** Program compile date = Oct 16 2019





MY 3dDeconvolve COMMAND is:

# run the regression analysis
3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD \
-censor censor_${subj}_combined_2.1D \
-polort 3 \
-global_times \
-num_stimts 13 \
-jobs 3 \
-stim_times_AM2 1 stimuli/${subj}_choiceT1_sam8apr21 'BLOCK(8,1)' \
-stim_label 1 Choice \
-stim_file 2 motion_demean.1D'[0]' -stim_base 2 -stim_label 2 roll_01 \
-stim_file 3 motion_demean.1D'[1]' -stim_base 3 -stim_label 3 pitch_01 \
-stim_file 4 motion_demean.1D'[2]' -stim_base 4 -stim_label 4 yaw_01 \
-stim_file 5 motion_demean.1D'[3]' -stim_base 5 -stim_label 5 dS_01 \
-stim_file 6 motion_demean.1D'[4]' -stim_base 6 -stim_label 6 dL_01 \
-stim_file 7 motion_demean.1D'[5]' -stim_base 7 -stim_label 7 dP_01 \
-stim_file 8 motion_deriv.1D'[0]' -stim_base 8 -stim_label 8 roll_02 \
-stim_file 9 motion_deriv.1D'[1]' -stim_base 9 -stim_label 9 pitch_02 \
-stim_file 10 motion_deriv.1D'[2]' -stim_base 10 -stim_label 10 yaw_02 \
-stim_file 11 motion_deriv.1D'[3]' -stim_base 11 -stim_label 11 dS_02 \
-stim_file 12 motion_deriv.1D'[4]' -stim_base 12 -stim_label 12 dL_02 \
-stim_file 13 motion_deriv.1D'[5]' -stim_base 13 -stim_label 13 dP_02 \
-x1D_uncensored X.nocensor.xmat.1D \
-censorTR $IvDcensors \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-errts errts.${subj} \
-bucket stats.$subj


stimuli/CG1362_choiceT1_sam8apr21
4*1,-1 18*1,-1 32*1,1 48*1,1 62*-1,-1 74*-1,-1 88*1,-1 102*1,-1 116*-1,-1 128*1,-1 144*1,1 156*-1,-1 172*-1,1 186*1,-1 198*1,-1 212*-1,-1 228*1,1 244*-1,-1 260*-1,1 276*-1,-1 290*1,-1 306*-1,-1 318*-1,1 330*1,-1 342*1,-1 358*-1,-1 374*-1,-1 390*-1,-1 404*1,-1 416*1,1 430*1,-1 444*-1,1 456*1,-1 470*-1,1 484*1,-1 498*1,-1 516*-1,-1 528*1,-1 540*1,-1 552*1,-1 566*-1,-1 582*-1,-1 596*1,-1 612*1,-1 626*-1,1 642*-1,-1 656*1,-1 670*1,-1 682*-1,1 696*-1,-1 710*-1,-1 726*1,-1 740*1,-1 752*-1,-1 772*-1,-1 788*1,1 800*-1,-1 812*1,-1 828*1,-1 842*-1,-1 856*-1,-1 868*1,-1 880*1,-1 894*1,-1 908*1,1 920*1,-1 934*-1,-1 948*-1,-1 964*-1,-1 978*-1,-1 992*1,-1 1008*1,-1



/regression_only$ file_tool -test -infile ../../CurrResults/SubjectsFolders/SUBJECT_FOLDERS_APR_2021/CG1362.results/stimuli/CG1362_choiceT1_sam8apr21.txt
stimuli/CG1362_choiceT1_sam8apr21.txt has 0 bad characters
stimuli/CG1362_choiceT1_sam8apr21.txt file type: UNIX