AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 09, 2021 10:25AM
Hi Paul,

Thanks for your quick reply. When specifying -olay_alpha Yes -olay_boxed Yes, is there a way to then also account for the cluster extend threshold of k =10 that was suggested in the preprint? So far, I could get Example 5 to work with a lenient p=0.05 showing highlighted data, but not accounting for the suggested cluster size k=10. Likewise, I can get Example 6 to work where 3dClusterize is run firstly so that the plotted overlay only contains voxels surviving p=0.05 and k=10, but then I cannot plot the sub threshold voxels. From how I understood the suggestion in the preprint, it would be ideal to present the data in a way that combines the advantages of Example 5 and 6. If you could give me pointers on how to achieve that, that would be highly appreciated.

Many thanks,
Stef
Subject Author Posted

Sticky Thoughts about modeling and result reporting

gang May 11, 2021 07:59AM

Re: Thoughts about modeling and result reporting

munoztd0 May 19, 2021 05:24PM

Re: Thoughts about modeling and result reporting

gang May 20, 2021 07:05AM

Re: Thoughts about modeling and result reporting

munoztd0 May 20, 2021 08:58AM

Re: Thoughts about modeling and result reporting

gang May 20, 2021 10:15PM

Re: Thoughts about modeling and result reporting

munoztd0 May 25, 2021 08:51AM

Re: Thoughts about modeling and result reporting

s.meliss September 07, 2021 10:09AM

Re: Thoughts about modeling and result reporting

ptaylor September 07, 2021 10:58AM

Re: Thoughts about modeling and result reporting

s.meliss September 09, 2021 10:25AM

Re: Thoughts about modeling and result reporting

ptaylor September 11, 2021 04:17PM

Re: Thoughts about modeling and result reporting

ptaylor October 01, 2021 03:31PM