AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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tamtam
May 12, 2021 10:15PM
Hello,

We have a participant who completed an anatomical, 2 epi runs and then unfortunately, had to be removed from the scanner. Shortly after, the participant went back in to complete the remaining 3 runs and completed another anatomical.

I was wondering whether there is a way to salvage and possibly use this data? Can I average the two anatomical scans and align all the functional runs to this average anatomical scan? Alternatively, can I align the remaining 3 runs to the first anatomical scan using the "-ginormous_move" or "-align_centers" option?

Thank you very much.
Tamara
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Alignment with two anatomical scans

tamtam May 12, 2021 10:15PM