AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Aaron_Chang
May 14, 2021 11:19PM
Hi, experts.
I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep: 

fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w    --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32

However, after preprocessing, I got anat in original format (sub1_T1+orig.HEAD) while EPIs in tlrc format after transformed by 3dcopy in AFNI (sub-1_task-checker_acq-TR156_space-T1w_desc-preproc_bold+tlrc.HEAD). As a result, after GLM analysis, I cannot use T1 as underlay, when applying the stats in tlrc format as overlay. Is there a command that might work for me?
Thanks for the help!
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Fmriprep：how to match functional datasets with subject’s individual T1 space

Aaron_Chang May 14, 2021 11:19PM