AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 16, 2021 09:57PM
Your question reminded me of an old thread on how to divide up a region based on distance.

https://afni.nimh.nih.gov/afni/community/board/read.php?1,157456,157474#msg-157474

A couple small corrections - from 3dcalc's help, the use of the 'l' ("ell") character is for the 4th dimension index. The RAI order is *NOT* assumed unless -RAI or -dicom is given as an option; the storage orientation is assumed for xyz.

Similarly, the '-i', '-j', and '-k' values, if not otherwise used,     
 will be loaded with the voxel spatial index coordinates.  The '-l'     
 (letter 'ell') value will be loaded with the temporal index coordinate.

 The '-n' value, if not otherwise used, will be loaded with the overall 
 voxel 1D index.  For a 3D dataset, n = i + j*NX + k*NX*NY, where       
 NX, NY, NZ are the array dimensions of the 3D grid.  [29 Jul 2010]     

 Otherwise undefined letters will be set to zero.  In the future, new   
 default values for other letters may be added.                         

 NOTE WELL: By default, the coordinate order of (x,y,z) is the order in 
 *********  which the data array is stored on disk; this order is output
            by 3dinfo.  The options below control can change this order:

 -dicom }= Sets the coordinates to appear in DICOM standard (RAI) order,
 -RAI   }= (the AFNI standard), so that -x=Right, -y=Anterior , -z=Inferior,
                                        +x=Left , +y=Posterior, +z=Superior.

 -SPM   }= Sets the coordinates to appear in SPM (LPI) order,           
 -LPI   }=                      so that -x=Left , -y=Posterior, -z=Inferior,
                                        +x=Right, +y=Anterior , +z=Superior.
Subject Author Posted

Subdivide anatomical ROI based on slice numbers

mrinmayik May 16, 2021 12:07AM

Re: Subdivide anatomical ROI based on slice numbers

ptaylor May 16, 2021 01:24PM

Re: Subdivide anatomical ROI based on slice numbers

Daniel Glen May 16, 2021 09:57PM