AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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wgraves
May 28, 2021 09:54AM
Hello AFNI developers,
Sorry for throwing a problem out there right before Memorial Day weekend, but I figured it was worth mentioning.
When I run auto_warp.py it fails to find "./base.nii".
Here's the actual command, in case that helps:
auto_warp.py -base /usr/lib/afni/bin/MNI152_2009_template_SSW.nii.gz -input /usr/lib/afni/bin/TT_N27+tlrc -output_dir /home/wgraves/data/ABIDE_local/rest_fc_v1/awpy -skull_strip_base no -skull_strip_input no

However, when I run the identical auto_warp.py command but only change the environment variable in my .afnirc file from:
AFNI_COMPRESSOR = GZIP
to NONE, it works.
I think Paul Taylor fixed this issue with afni_proc.py so that it now handles gz files. Presumably the same thing is happening here. I'd appreciate any help you can give!
Best,
Will



Edited 1 time(s). Last edit at 05/28/2021 10:26AM by wgraves.
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Subject Author Posted

auto_warp.py fails with .gz files

wgraves May 28, 2021 09:54AM

Re: auto_warp.py fails with .gz files

ptaylor May 31, 2021 12:14AM

Re: auto_warp.py fails with .gz files

wgraves June 03, 2021 10:01AM