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June 11, 2021 12:31PM
If I do a 3dAllineate on the volume before feeding it into @animal_warper, I still get the same error.

3dAllineate -source SingleSubject.nii.gz -base NMT_v2.0_sym.nii.gz -prefix SingleSubject_al.nii.gz -cmass -warp shift_rotate -overwrite -float -newgrid 0.5

The resulting file looks good and indeed pretty well aligned with the NMT. Within @animal_warper intermediate results, the pshft file also looks good, but the shft volume moves *away* from the already pretty well aligned input and NMT volumes, so I guess this is where things start to move off the rails...


Subject Author Posted

@animal_warper suddenly fails

ChrisKlink June 10, 2021 03:45AM

Re: @animal_warper suddenly fails

ChrisKlink June 10, 2021 12:30PM

Re: @animal_warper suddenly fails

ptaylor June 10, 2021 06:33PM

Re: @animal_warper suddenly fails

ChrisKlink June 11, 2021 08:57AM

Re: @animal_warper suddenly fails Attachments

ChrisKlink June 11, 2021 12:31PM

Re: @animal_warper suddenly fails

ChrisKlink June 18, 2021 02:39PM

Re: @animal_warper suddenly fails

ptaylor June 21, 2021 09:20AM



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