AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 11, 2021 12:31PM
If I do a 3dAllineate on the volume before feeding it into @animal_warper, I still get the same error.

3dAllineate -source SingleSubject.nii.gz -base NMT_v2.0_sym.nii.gz -prefix SingleSubject_al.nii.gz -cmass -warp shift_rotate -overwrite -float -newgrid 0.5

The resulting file looks good and indeed pretty well aligned with the NMT. Within @animal_warper intermediate results, the pshft file also looks good, but the shft volume moves *away* from the already pretty well aligned input and NMT volumes, so I guess this is where things start to move off the rails...
Attachments:
open | download - init_qc_00_inp_base.jpg (102.3 KB)
open | download - init_qc_01_inpsh_base.jpg (103.2 KB)
Subject Author Posted

@animal_warper suddenly fails

ChrisKlink June 10, 2021 03:45AM

Re: @animal_warper suddenly fails

ChrisKlink June 10, 2021 12:30PM

Re: @animal_warper suddenly fails

ptaylor June 10, 2021 06:33PM

Re: @animal_warper suddenly fails

ChrisKlink June 11, 2021 08:57AM

Re: @animal_warper suddenly fails Attachments

ChrisKlink June 11, 2021 12:31PM

Re: @animal_warper suddenly fails

ChrisKlink June 18, 2021 02:39PM

Re: @animal_warper suddenly fails

ptaylor June 21, 2021 09:20AM

Re: @animal_warper suddenly fails

Tahereh August 09, 2021 02:43AM

Re: @animal_warper suddenly fails

Tahereh August 09, 2021 03:23AM

Re: @animal_warper suddenly fails

Doughboys October 26, 2021 09:53PM

Re: @animal_warper suddenly fails

ptaylor October 27, 2021 10:03AM

Re: @animal_warper suddenly fails

Doughboys October 27, 2021 11:41AM

Re: @animal_warper suddenly fails

Doughboys October 29, 2021 05:51PM

Re: @animal_warper suddenly fails

Doughboys October 29, 2021 07:38PM

Re: @animal_warper suddenly fails

ptaylor October 30, 2021 09:31AM

Re: @animal_warper suddenly fails

Doughboys October 30, 2021 03:20PM

Re: @animal_warper suddenly fails

ptaylor October 31, 2021 04:40PM

Re: @animal_warper suddenly fails

Doughboys November 01, 2021 09:17AM