Hello,
I have a simple monkey/animal_warper/afni_proc.py question. I am modifying the MACAQUE_DEMO_REST pipeline.
If I want to use eroded WM signal as a nuisance regressor in afni_proc (whether via anaticor or as averaged WM), and I have WM mask from the NMT template, I should import the mask in NMT space into afni_proc, correct?
So this:
afni_proc.py \
[...]
-mask_import WM_mask ${additional_path}/WMe_mask+tlrc \
[...]
-regress_ROI WM_mask \
or this
afni_proc.py \
[...]
-mask_import WM_mask ${additional_path}/WMe_mask+tlrc \
[...]
-regress_anaticor_fast \
-regress_anaticor_radius 20 \
-regress_anaticor_label WM_mask \
instead of
afni_proc.py \
[...]
-anat_follower_ROI WMmask epi ${odir_aw}'/'WM_anat_mask+orig \
-anat_follower_erode WMmask \
[...]
-regress_anaticor_fast \
-regress_anaticor_radius 20 \
-regress_anaticor_label WMmask \
because the latter would involve warping the WM mask from the NMT to individual space in animal warper and then warping it back to NMT space in afni_proc, right?
