AFNI Message Board

History of AFNI updates  

|
June 17, 2021 03:11PM
Hi Clem,

sorry for jumping into your thread, but I am a fellow AFNI/NHP/MION user who has been struggling with similar issues.

So you did you get it to work with 3dSkullStrip and -skullstrip_opts -monkey and cost lpa+ZZ, correct?

For me, both 3dSkullstrip and 3dAutomask always failed on a subset of session (each in its own distinct way), but I found out that no epi skullstripping and lpa (without +ZZ) worked surprisingly well for me.

But I never learned about -skullstrip_opts -monkey before, so thank you for this thread, it was educational for me and I am going to test this option on my dataset.
Subject Author Posted

-epi_strip in afni_proc.py for monkeys

Doughboys June 14, 2021 08:59PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 16, 2021 03:53PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 16, 2021 05:51PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 01:39PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 17, 2021 02:21PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 03:02PM

Re: -epi_strip in afni_proc.py for monkeys

Pawel June 17, 2021 03:11PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 03:32PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 18, 2021 10:29AM



Sorry, only registered users may post in this forum.

Click here to login