AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 16, 2021 06:54PM
Hmm I see, but I guess the voxel size will be different since the EPI might have lower resolution than the T1, no?
Also this will be done only on a subject-to-subject basis, it's just for individualized targeting approaches.

Here is the command

3dAllineate -base ${anat} -input ${maskdir}/MNI152_2009_template.nii -prefix ${wdir}/MNIinNative_formatrix -1Dmatrix_save transformation_matrix

and then:
3dAllineate -base ${anat} -input ${maskdir}/language_comprehension_fromNeuroSynth.nii -prefix ${wdir}/WernickeinNative -1Dmatrix_apply ${wdir}/transformation_matrix.aff12.1D
Subject Author Posted

3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 04:48PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 05:54PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 06:06PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 06:39PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

Lysianne June 16, 2021 06:54PM

Re: 3d clusterize - mask and stat.test don't match in [0] dimensions

ptaylor June 16, 2021 08:17PM