Hi Gang,
So each monkey had one session. In the session, we were looking at pre- vs. post-injection of a substance and effect on resting state FC.
In the session there were 2 runs pre-inj and 3 runs post-inj.
For the dlPFC seed-based analysis, I ran afni_proc.py on each timepoint (so one pre with the two scans and one post with the three scans) and then went from there. I figured I may have to adjust something if I am interested in just comparing dlPFC activation post vs. pre injection.
Thanks for the help and let me know any other info you'd like!