AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 08, 2021 11:53AM
I tried this
rs_fMRI_S004_nii xiyuezh$ 3drefit -Tslices `cat Test45.1D` 'S014.rs.nii'
and it works. The nii data is 45 slices * 200 volumn. AFNI count it as 45 slices. The 1D file actually has 45 timepoints.

Quote
++ 3drefit: AFNI version=AFNI_21.1.02 (Apr 16 2021) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset S014.rs.nii
+ setting slice time offsets
+ loading and re-writing dataset S014.rs.nii (/Users/.../S014.rs.nii in NIFTI storage)
++ 3drefit processed 1 datasets


But when I open S014.rs.nii, the time info of each slice is still 0. I am wondering where to find the time info added.
Is this t the right place for time slicing?




Edited 1 time(s). Last edit at 07/08/2021 01:05PM by xiyuezh.
Subject Author Posted

Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 10:52AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 06, 2021 02:35PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 05:26PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 10:05AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 10:46AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 11:45AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 09:51AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 10:43AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 11:29AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 12, 2021 01:25PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 04:02PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 05:32PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 11:53AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 01:12PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 05:40PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 04:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 05:57PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 13, 2021 06:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 06:59PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 09:22PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 15, 2021 10:55AM