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July 08, 2021 11:53AM
I tried this
rs_fMRI_S004_nii xiyuezh$ 3drefit -Tslices `cat Test45.1D` 'S014.rs.nii'
and it works. The nii data is 45 slices * 200 volumn. AFNI count it as 45 slices. The 1D file actually has 45 timepoints.

Quote
++ 3drefit: AFNI version=AFNI_21.1.02 (Apr 16 2021) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset S014.rs.nii
+ setting slice time offsets
+ loading and re-writing dataset S014.rs.nii (/Users/.../S014.rs.nii in NIFTI storage)
++ 3drefit processed 1 datasets


But when I open S014.rs.nii, the time info of each slice is still 0. I am wondering where to find the time info added.
Is this t the right place for time slicing?




Edited 1 time(s). Last edit at 07/08/2021 01:05PM by xiyuezh.
Subject Author Posted

Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 10:52AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 06, 2021 02:35PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 05:26PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 10:05AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 10:46AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 11:45AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 09:51AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 10:43AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 11:29AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 12, 2021 01:25PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 04:02PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 05:32PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 11:53AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 01:12PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 05:40PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 04:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 05:57PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 13, 2021 06:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 06:59PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 09:22PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 15, 2021 10:55AM



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