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July 08, 2021 01:12PM
And yes, that should work just fine. Except that it looks like the text file (test45.1D) isn't representing the altplus/alt+z timing information. Instead it just goes from slice 1 to slice 45 in an ascending way.

So if the data is actually ascending you could use -tpattern seqplus. If it's supposed to be altplus or alt+z then you should use that information or a text file that appropriately represents it.

The @t is the TR time, e.g. index * TR.

To view the slice timing info, you can use 3dinfo -VERB.

3dinfo -VERB test+orig.

or -slice_timing

3dinfo -slice_timing test+orig.



Edited 2 time(s). Last edit at 07/08/2021 01:17PM by Peter Molfese.
Subject Author Posted

Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 10:52AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 06, 2021 02:35PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 06, 2021 05:26PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 10:05AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 10:46AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 11:45AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 09:51AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 10:43AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 11:29AM

Re: Add Time Slicing data to Nifti file

xiyuezh July 12, 2021 01:25PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 07, 2021 04:02PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 07, 2021 05:32PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 11:53AM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 08, 2021 01:12PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 08, 2021 05:40PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 04:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 05:57PM

Re: Add Time Slicing data to Nifti file

Peter Molfese July 13, 2021 06:13PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 13, 2021 06:59PM

Re: Add Time Slicing data to Nifti file

rick reynolds July 13, 2021 09:22PM

Re: Add Time Slicing data to Nifti file

xiyuezh July 15, 2021 10:55AM



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