AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 01, 2021 02:00PM
Howdy-

I think we will need some more details to be able to diagnose+prescribe here...

Could you please let us know:
+ alignment command you ran---I am not even sure if we are talking about anatomical-template alignment, EPI-anatomical, or the combination thereof; and if nonlinear alignment between the anatomical and template are involved, what program is being used (3dQwarp, auto_warp.py or the recommended @SSwarper)?
+ what is the "issue" with this dataset? Can you please attach an image.
+ also, what version of AFNI are you using ("afni -ver")

thanks,
pt
Subject Author Posted

Warping/alignment issue

kkerr September 01, 2021 10:02AM

Re: Warping/alignment issue

ptaylor September 01, 2021 02:00PM

Re: Warping/alignment issue Attachments

kkerr September 02, 2021 11:41AM

Re: Warping/alignment issue

Daniel Glen September 02, 2021 01:59PM

Re: Warping/alignment issue Attachments

kkerr September 03, 2021 10:18AM

Re: Warping/alignment issue

ptaylor September 03, 2021 05:03PM

Re: Warping/alignment issue

Daniel Glen September 07, 2021 10:37AM

Re: Warping/alignment issue Attachments

kkerr September 15, 2021 11:53AM

Re: Warping/alignment issue

Daniel Glen September 17, 2021 03:12PM

Re: Warping/alignment issue Attachments

kkerr September 20, 2021 02:56PM

Re: Warping/alignment issue Attachments

kkerr September 20, 2021 03:00PM

Re: Warping/alignment issue

ptaylor September 20, 2021 03:12PM