AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
September 15, 2021 12:06AM
You can use @animal_warper to do this for you. If you are treating the resting state networks as a region of interest, it can also move the ROIs with the same alignment transformations it finds for moving one template to another.

@animal_warper -base NMT_v2.1_sym_SS.nii.gz -input NMT_v1.3_SS.nii.gz -no_surfaces \
-outdir aw_nmt1.3to2.1_nl -ok_to_exist -base_abbrev nmtv2 -template_abbrevs nmt2 \
-cost lpa -roidset_followers my_nmt1.3space_rsn_rois.nii.gz

This example aligns to the symmetric template at the full resolution, but you may also choose a lower resolution, the asymmetric version or full head versions too. If you need, I can also make the warp transformations computed from the above command available.
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NMT v1.3 to NMT v2

anamanea September 10, 2021 05:18PM

Re: NMT v1.3 to NMT v2

Daniel Glen September 15, 2021 12:06AM