AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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khc31
October 12, 2021 01:41PM
Hello,

I am currently trying to compare 3dvolreg and SLOMOCO to see which head motion correction method I want to use. I know you can do 3dvolreg and censoring at the same time by using afni_proc. However, does anyone know how I can apply censoring to SLOMOCO so I can take out specific slices? The current code I use to generate SLOMOCO is

slicemoco_newalgorithem.sh -d $SubID$Time.fMRI1+orig

I am also wondering if there's a way to record how many slices/volumes afni_proc is censoring.

Thanks in advance for any advice/ideas!
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Subject Author Posted

slomoco and censoring

khc31 October 12, 2021 01:41PM

Re: slomoco and censoring

rick reynolds October 15, 2021 10:26AM

Re: slomoco and censoring

wanyongshin May 12, 2022 12:08PM