AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 18, 2021 10:39AM
Partial volumes are often tricky based on the content of the slab and contrast. Seems like you've tried most of the ways I've used in the past to get alignment. Can you post some screenshots and perhaps send me a PM to download the data?

Some have found this blog post to be helpful: [blog.cogneurostats.com]
Subject Author Posted

Cannot get good alignment with align_epi_anat.py or 3dAllineate

hdempseyjones October 18, 2021 12:25AM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

Peter Molfese October 18, 2021 10:39AM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

hdempseyjones October 19, 2021 07:22PM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

Daniel Glen October 18, 2021 01:57PM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

hdempseyjones October 25, 2021 03:29AM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

ptaylor October 25, 2021 10:25AM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate Attachments

hdempseyjones October 25, 2021 09:57PM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

ptaylor October 26, 2021 08:23AM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

hdempseyjones November 22, 2021 11:57PM

Re: Cannot get good alignment with align_epi_anat.py or 3dAllineate

Daniel Glen November 23, 2021 10:34AM