AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 12, 2021 05:12AM
Thanks Gang!

I'm just thinking out loud, maybe this is unreasonable. Big data is getting more and more popular. It's not rare to run statistics on between 2000-10000 subjects. 3dMVM seems to able to run huge datasets, but the internal function -resid can not. And this is even on a 500 GB RAM system. Larger systems are rare.

Are you planning on updating the functionalities in the future to support big-datasets? Maybe make them create temporary files on the hard-drive instead of keeping it all in the RAM? I have no idea of what I'm talking about. But I think this is a relevant topic for the future =).
fsl-randomize also has an issue with memory if you want to parallelize it (randomize_parallel). And running it normally with 6k subjects takes days for a single contrast. Big data has its issues...

Another 3dMVM -resid question:
When running a standard AFNI-pipeline analysis with group analysis in 3dMVM the process has been to use the residuals from the pre-proc to calculate the smoothness of the data -> 3dFWHMx -acf -> 3dCluststim.
In this standard approach, would it also be OK to use the 3dMVM residuals instead of the pre-proc residuals?
Is this reasonable for
task: input is a a stats-file sub-brik
rest: input is e.g. an R-map based on the residuals (errts)

Thanks!
Subject Author Posted

3dMVM -residuals error

Robin November 06, 2021 03:05PM

Re: 3dMVM -residuals error

gang November 08, 2021 03:57PM

Re: 3dMVM -residuals error

Robin November 12, 2021 05:12AM

Re: 3dMVM -residuals error

gang November 15, 2021 10:09AM

Re: 3dMVM -residuals error

Robin November 16, 2021 05:38AM

Re: 3dMVM -residuals error

gang November 16, 2021 08:14AM

Re: 3dMVM -residuals error

Robin May 04, 2022 07:39AM

Re: 3dMVM -residuals error

rick reynolds May 04, 2022 10:44AM

Re: 3dMVM -residuals error

Robin May 09, 2022 05:03AM

Re: 3dMVM -residuals error

gang May 10, 2022 07:46AM

Re: 3dMVM -residuals error

Robin May 17, 2022 09:11AM

Re: 3dMVM -residuals error

gang May 21, 2022 04:28PM

Re: 3dMVM -residuals error

Robin May 24, 2022 07:56AM

Re: 3dMVM -residuals error

gang May 25, 2022 11:15AM