AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 01, 2021 10:33PM
Depending on exactly what you want to do, the typical and simple method is to do what you have said and move all ROIs at the same time. You can input CSF/Ventricles/White matter as input ROIs for afni_proc.py. Brainstem and cerebellum are often more difficult to align across subjects while still trying to align the cerebrum at the same time. You can do these as separate alignments if that's important to you.The SUIT cerebellum atlas and template have their own template you can use for that purpose.
Subject Author Posted

Alignment issue Attachments

jkblujus November 29, 2021 06:32PM

Re: Alignment issue

Daniel Glen November 30, 2021 01:47PM

Re: Alignment issue Attachments

jkblujus December 01, 2021 10:01AM

Re: Alignment issue

Daniel Glen December 01, 2021 10:33PM