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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| December 30, 2021 02:34PM | |
Registered: 2 years ago Posts: 20 |
Dear all,
I am trying to design a 2x3 repeated measure design for a within subject study where we have three interventions as condition and the resting state fMRI performed pre and post intervention. I want to calculate the time (pre vs post) and intervention( 3types: control,low and high) interactions.I also wanted to assess that between intervention (pre-post differences with respect to a seed region). For this purpose, I created two scripts: one with using 3dANOVA3 type 4 and another using 3dMVM. could you please have a look at both command-line scripts and let me know if there any further changes required.
3dANOVA3 script:
3dANOVA3 -type 4 \
-alevels 2 \
-blevels 3 \
-clevels 15 \
-dset 1 1 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-5/sub-BEACON02_ses-5_AMY_bil.nii.gz \
-dset 1 1 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-5/sub-BEACON03_ses-5_AMY_bil.nii.gz \
-dset 1 1 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-5/sub-BEACON04_ses-5_AMY_bil.nii.gz \
-dset 1 1 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-5/sub-BEACON06_ses-5_AMY_bil.nii.gz \
-dset 1 1 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-5/sub-BEACON07_ses-5_AMY_bil.nii.gz \
-dset 1 1 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-5/sub-BEACON08_ses-5_AMY_bil.nii.gz \
-dset 1 1 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-5/sub-BEACON09_ses-5_AMY_bil.nii.gz \
-dset 1 1 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-5/sub-BEACON13_ses-5_AMY_bil.nii.gz \
-dset 1 1 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-5/sub-BEACON14_ses-5_AMY_bil.nii.gz \
-dset 1 1 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-5/sub-BEACON15_ses-5_AMY_bil.nii.gz \
-dset 1 1 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-5/sub-BEACON16_ses-5_AMY_bil.nii.gz \
-dset 1 1 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-5/sub-BEACON18_ses-5_AMY_bil.nii.gz \
-dset 1 1 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-5/sub-BEACON19_ses-5_AMY_bil.nii.gz \
-dset 1 1 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-5/sub-BEACON21_ses-5_AMY_bil.nii.gz \
-dset 1 1 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-5/sub-BEACON23_ses-5_AMY_bil.nii.gz \
-dset 1 2 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-3/sub-BEACON02_ses-3_AMY_bil.nii.gz \
-dset 1 2 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-3/sub-BEACON03_ses-3_AMY_bil.nii.gz \
-dset 1 2 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-3/sub-BEACON04_ses-3_AMY_bil.nii.gz \
-dset 1 2 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-3/sub-BEACON06_ses-3_AMY_bil.nii.gz \
-dset 1 2 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-3/sub-BEACON07_ses-3_AMY_bil.nii.gz \
-dset 1 2 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-3/sub-BEACON08_ses-3_AMY_bil.nii.gz \
-dset 1 2 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-3/sub-BEACON09_ses-3_AMY_bil.nii.gz \
-dset 1 2 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-3/sub-BEACON13_ses-3_AMY_bil.nii.gz \
-dset 1 2 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-3/sub-BEACON14_ses-3_AMY_bil.nii.gz \
-dset 1 2 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-3/sub-BEACON15_ses-3_AMY_bil.nii.gz \
-dset 1 2 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-3/sub-BEACON16_ses-3_AMY_bil.nii.gz \
-dset 1 2 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-3/sub-BEACON18_ses-3_AMY_bil.nii.gz \
-dset 1 2 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-3/sub-BEACON19_ses-3_AMY_bil.nii.gz \
-dset 1 2 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-3/sub-BEACON21_ses-3_AMY_bil.nii.gz \
-dset 1 2 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-3/sub-BEACON23_ses-3_AMY_bil.nii.gz \
-dset 1 3 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-1/sub-BEACON02_ses-1_AMY_bil.nii.gz \
-dset 1 3 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-1/sub-BEACON03_ses-1_AMY_bil.nii.gz \
-dset 1 3 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-1/sub-BEACON04_ses-1_AMY_bil.nii.gz \
-dset 1 3 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-1/sub-BEACON06_ses-1_AMY_bil.nii.gz \
-dset 1 3 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-1/sub-BEACON07_ses-1_AMY_bil.nii.gz \
-dset 1 3 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-1/sub-BEACON08_ses-1_AMY_bil.nii.gz \
-dset 1 3 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-1/sub-BEACON09_ses-1_AMY_bil.nii.gz \
-dset 1 3 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-1/sub-BEACON13_ses-1_AMY_bil.nii.gz \
-dset 1 3 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-1/sub-BEACON14_ses-1_AMY_bil.nii.gz \
-dset 1 3 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-1/sub-BEACON15_ses-1_AMY_bil.nii.gz \
-dset 1 3 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-1/sub-BEACON16_ses-1_AMY_bil.nii.gz \
-dset 1 3 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-1/sub-BEACON18_ses-1_AMY_bil.nii.gz \
-dset 1 3 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-1/sub-BEACON19_ses-1_AMY_bil.nii.gz \
-dset 1 3 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-1/sub-BEACON21_ses-1_AMY_bil.nii.gz \
-dset 1 3 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-1/sub-BEACON23_ses-1_AMY_bil.nii.gz \
-dset 2 1 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-6/sub-BEACON02_ses-6_AMY_bil.nii.gz \
-dset 2 1 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-6/sub-BEACON03_ses-6_AMY_bil.nii.gz \
-dset 2 1 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-6/sub-BEACON04_ses-6_AMY_bil.nii.gz \
-dset 2 1 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-6/sub-BEACON06_ses-6_AMY_bil.nii.gz \
-dset 2 1 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-6/sub-BEACON07_ses-6_AMY_bil.nii.gz \
-dset 2 1 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-6/sub-BEACON08_ses-6_AMY_bil.nii.gz \
-dset 2 1 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-6/sub-BEACON09_ses-6_AMY_bil.nii.gz \
-dset 2 1 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-6/sub-BEACON13_ses-6_AMY_bil.nii.gz \
-dset 2 1 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-6/sub-BEACON14_ses-6_AMY_bil.nii.gz \
-dset 2 1 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-6/sub-BEACON15_ses-6_AMY_bil.nii.gz \
-dset 2 1 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-6/sub-BEACON16_ses-6_AMY_bil.nii.gz \
-dset 2 1 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-6/sub-BEACON18_ses-6_AMY_bil.nii.gz \
-dset 2 1 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-6/sub-BEACON19_ses-6_AMY_bil.nii.gz \
-dset 2 1 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-6/sub-BEACON21_ses-6_AMY_bil.nii.gz \
-dset 2 1 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-6/sub-BEACON23_ses-6_AMY_bil.nii.gz \
-dset 2 2 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-4/sub-BEACON02_ses-4_AMY_bil.nii.gz \
-dset 2 2 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-4/sub-BEACON03_ses-4_AMY_bil.nii.gz \
-dset 2 2 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-4/sub-BEACON04_ses-4_AMY_bil.nii.gz \
-dset 2 2 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-4/sub-BEACON06_ses-4_AMY_bil.nii.gz \
-dset 2 2 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-4/sub-BEACON07_ses-4_AMY_bil.nii.gz \
-dset 2 2 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-4/sub-BEACON08_ses-4_AMY_bil.nii.gz \
-dset 2 2 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-4/sub-BEACON09_ses-4_AMY_bil.nii.gz \
-dset 2 2 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-4/sub-BEACON13_ses-4_AMY_bil.nii.gz \
-dset 2 2 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-4/sub-BEACON14_ses-4_AMY_bil.nii.gz \
-dset 2 2 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-4/sub-BEACON15_ses-4_AMY_bil.nii.gz \
-dset 2 2 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-4/sub-BEACON16_ses-4_AMY_bil.nii.gz \
-dset 2 2 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-4/sub-BEACON18_ses-4_AMY_bil.nii.gz \
-dset 2 2 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-4/sub-BEACON19_ses-4_AMY_bil.nii.gz \
-dset 2 2 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-4/sub-BEACON21_ses-4_AMY_bil.nii.gz \
-dset 2 2 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-4/sub-BEACON23_ses-4_AMY_bil.nii.gz \
-dset 2 3 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-2/sub-BEACON02_ses-2_AMY_bil.nii.gz \
-dset 2 3 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-2/sub-BEACON03_ses-2_AMY_bil.nii.gz \
-dset 2 3 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-2/sub-BEACON04_ses-2_AMY_bil.nii.gz \
-dset 2 3 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-2/sub-BEACON06_ses-2_AMY_bil.nii.gz \
-dset 2 3 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-2/sub-BEACON07_ses-2_AMY_bil.nii.gz \
-dset 2 3 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-2/sub-BEACON08_ses-2_AMY_bil.nii.gz \
-dset 2 3 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-2/sub-BEACON09_ses-2_AMY_bil.nii.gz \
-dset 2 3 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-2/sub-BEACON13_ses-2_AMY_bil.nii.gz \
-dset 2 3 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-2/sub-BEACON14_ses-2_AMY_bil.nii.gz \
-dset 2 3 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-2/sub-BEACON15_ses-2_AMY_bil.nii.gz \
-dset 2 3 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-2/sub-BEACON16_ses-2_AMY_bil.nii.gz \
-dset 2 3 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-2/sub-BEACON18_ses-2_AMY_bil.nii.gz \
-dset 2 3 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-2/sub-BEACON19_ses-2_AMY_bil.nii.gz \
-dset 2 3 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-2/sub-BEACON21_ses-2_AMY_bil.nii.gz \
-dset 2 3 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-2/sub-BEACON23_ses-2_AMY_bil.nii.gz \
-fa time \
-fb condition \
-fab time*cond \
-adiff 1 2 prevspost \
-bdiff 1 2 contvsL \
-bdiff 1 3 contvsH \
-bdiff 2 3 lvsH \
-bcontr -0.5 1 -0.5 LvscontH \
-bcontr 1 -0.5 -0.5 contvsLH \
-aBcontr 1 -1 : 1 precontvspostcont \
-aBcontr 1 -1 : 2 prelowvspostlow \
-aBcontr 1 -1 : 3 prehighvsposthigh \
-bucket BEACON_anova
another one is 3dMVM as given below:
3dMVM -prefix BEACON_MVM -jobs 12 \
-mask myMask+tlrc \
-bsVars 1 \
-wsVars 'condition*Time' \
-num_glt 9 \
-SC \
-gltLabel 1 control_t0 -gltCode 1 'condition : 1*cont Time : 1*0' \
-gltLabel 2 control_t1 -gltCode 2 'condition : 1*cont Time : 1*1' \
-gltLabel 3 low_t0 -gltCode 3 'condition : 1*low Time : 1*0' \
-gltLabel 4 low_t1 -gltCode 4 'condition : 1*low Time : 1*1' \
-gltLabel 5 high_t0 -gltCode 5 'condition : 1*high Time : 1*0' \
-gltLabel 6 high_t1 -gltCode 6 'condition : 1*high Time : 1*1' \
-gltLabel 7 control_vs_low_t0 -gltCode 7 'condition : 1*cont -1*low Time : 1*1 -1*0' \
-gltLabel 8 control_vs_high_t0 -gltCode 8 'condition : 1*cont -1*high Time : 1*1 -1*0' \
-gltLabel 9 low_vs_high_t0 -gltCode 9 'condition : 1*low -1*high Time : 1*1 -1*0' \
-dataTable @input_BEACON_AMY_both.txt \
Please have a look at both scripts and help me in acheiving my aim.
Best wishes,
~007
I am trying to design a 2x3 repeated measure design for a within subject study where we have three interventions as condition and the resting state fMRI performed pre and post intervention. I want to calculate the time (pre vs post) and intervention( 3types: control,low and high) interactions.I also wanted to assess that between intervention (pre-post differences with respect to a seed region). For this purpose, I created two scripts: one with using 3dANOVA3 type 4 and another using 3dMVM. could you please have a look at both command-line scripts and let me know if there any further changes required.
3dANOVA3 script:
3dANOVA3 -type 4 \
-alevels 2 \
-blevels 3 \
-clevels 15 \
-dset 1 1 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-5/sub-BEACON02_ses-5_AMY_bil.nii.gz \
-dset 1 1 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-5/sub-BEACON03_ses-5_AMY_bil.nii.gz \
-dset 1 1 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-5/sub-BEACON04_ses-5_AMY_bil.nii.gz \
-dset 1 1 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-5/sub-BEACON06_ses-5_AMY_bil.nii.gz \
-dset 1 1 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-5/sub-BEACON07_ses-5_AMY_bil.nii.gz \
-dset 1 1 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-5/sub-BEACON08_ses-5_AMY_bil.nii.gz \
-dset 1 1 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-5/sub-BEACON09_ses-5_AMY_bil.nii.gz \
-dset 1 1 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-5/sub-BEACON13_ses-5_AMY_bil.nii.gz \
-dset 1 1 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-5/sub-BEACON14_ses-5_AMY_bil.nii.gz \
-dset 1 1 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-5/sub-BEACON15_ses-5_AMY_bil.nii.gz \
-dset 1 1 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-5/sub-BEACON16_ses-5_AMY_bil.nii.gz \
-dset 1 1 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-5/sub-BEACON18_ses-5_AMY_bil.nii.gz \
-dset 1 1 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-5/sub-BEACON19_ses-5_AMY_bil.nii.gz \
-dset 1 1 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-5/sub-BEACON21_ses-5_AMY_bil.nii.gz \
-dset 1 1 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-5/sub-BEACON23_ses-5_AMY_bil.nii.gz \
-dset 1 2 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-3/sub-BEACON02_ses-3_AMY_bil.nii.gz \
-dset 1 2 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-3/sub-BEACON03_ses-3_AMY_bil.nii.gz \
-dset 1 2 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-3/sub-BEACON04_ses-3_AMY_bil.nii.gz \
-dset 1 2 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-3/sub-BEACON06_ses-3_AMY_bil.nii.gz \
-dset 1 2 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-3/sub-BEACON07_ses-3_AMY_bil.nii.gz \
-dset 1 2 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-3/sub-BEACON08_ses-3_AMY_bil.nii.gz \
-dset 1 2 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-3/sub-BEACON09_ses-3_AMY_bil.nii.gz \
-dset 1 2 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-3/sub-BEACON13_ses-3_AMY_bil.nii.gz \
-dset 1 2 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-3/sub-BEACON14_ses-3_AMY_bil.nii.gz \
-dset 1 2 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-3/sub-BEACON15_ses-3_AMY_bil.nii.gz \
-dset 1 2 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-3/sub-BEACON16_ses-3_AMY_bil.nii.gz \
-dset 1 2 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-3/sub-BEACON18_ses-3_AMY_bil.nii.gz \
-dset 1 2 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-3/sub-BEACON19_ses-3_AMY_bil.nii.gz \
-dset 1 2 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-3/sub-BEACON21_ses-3_AMY_bil.nii.gz \
-dset 1 2 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-3/sub-BEACON23_ses-3_AMY_bil.nii.gz \
-dset 1 3 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-1/sub-BEACON02_ses-1_AMY_bil.nii.gz \
-dset 1 3 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-1/sub-BEACON03_ses-1_AMY_bil.nii.gz \
-dset 1 3 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-1/sub-BEACON04_ses-1_AMY_bil.nii.gz \
-dset 1 3 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-1/sub-BEACON06_ses-1_AMY_bil.nii.gz \
-dset 1 3 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-1/sub-BEACON07_ses-1_AMY_bil.nii.gz \
-dset 1 3 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-1/sub-BEACON08_ses-1_AMY_bil.nii.gz \
-dset 1 3 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-1/sub-BEACON09_ses-1_AMY_bil.nii.gz \
-dset 1 3 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-1/sub-BEACON13_ses-1_AMY_bil.nii.gz \
-dset 1 3 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-1/sub-BEACON14_ses-1_AMY_bil.nii.gz \
-dset 1 3 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-1/sub-BEACON15_ses-1_AMY_bil.nii.gz \
-dset 1 3 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-1/sub-BEACON16_ses-1_AMY_bil.nii.gz \
-dset 1 3 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-1/sub-BEACON18_ses-1_AMY_bil.nii.gz \
-dset 1 3 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-1/sub-BEACON19_ses-1_AMY_bil.nii.gz \
-dset 1 3 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-1/sub-BEACON21_ses-1_AMY_bil.nii.gz \
-dset 1 3 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-1/sub-BEACON23_ses-1_AMY_bil.nii.gz \
-dset 2 1 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-6/sub-BEACON02_ses-6_AMY_bil.nii.gz \
-dset 2 1 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-6/sub-BEACON03_ses-6_AMY_bil.nii.gz \
-dset 2 1 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-6/sub-BEACON04_ses-6_AMY_bil.nii.gz \
-dset 2 1 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-6/sub-BEACON06_ses-6_AMY_bil.nii.gz \
-dset 2 1 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-6/sub-BEACON07_ses-6_AMY_bil.nii.gz \
-dset 2 1 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-6/sub-BEACON08_ses-6_AMY_bil.nii.gz \
-dset 2 1 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-6/sub-BEACON09_ses-6_AMY_bil.nii.gz \
-dset 2 1 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-6/sub-BEACON13_ses-6_AMY_bil.nii.gz \
-dset 2 1 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-6/sub-BEACON14_ses-6_AMY_bil.nii.gz \
-dset 2 1 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-6/sub-BEACON15_ses-6_AMY_bil.nii.gz \
-dset 2 1 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-6/sub-BEACON16_ses-6_AMY_bil.nii.gz \
-dset 2 1 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-6/sub-BEACON18_ses-6_AMY_bil.nii.gz \
-dset 2 1 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-6/sub-BEACON19_ses-6_AMY_bil.nii.gz \
-dset 2 1 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-6/sub-BEACON21_ses-6_AMY_bil.nii.gz \
-dset 2 1 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-6/sub-BEACON23_ses-6_AMY_bil.nii.gz \
-dset 2 2 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-4/sub-BEACON02_ses-4_AMY_bil.nii.gz \
-dset 2 2 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-4/sub-BEACON03_ses-4_AMY_bil.nii.gz \
-dset 2 2 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-4/sub-BEACON04_ses-4_AMY_bil.nii.gz \
-dset 2 2 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-4/sub-BEACON06_ses-4_AMY_bil.nii.gz \
-dset 2 2 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-4/sub-BEACON07_ses-4_AMY_bil.nii.gz \
-dset 2 2 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-4/sub-BEACON08_ses-4_AMY_bil.nii.gz \
-dset 2 2 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-4/sub-BEACON09_ses-4_AMY_bil.nii.gz \
-dset 2 2 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-4/sub-BEACON13_ses-4_AMY_bil.nii.gz \
-dset 2 2 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-4/sub-BEACON14_ses-4_AMY_bil.nii.gz \
-dset 2 2 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-4/sub-BEACON15_ses-4_AMY_bil.nii.gz \
-dset 2 2 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-4/sub-BEACON16_ses-4_AMY_bil.nii.gz \
-dset 2 2 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-4/sub-BEACON18_ses-4_AMY_bil.nii.gz \
-dset 2 2 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-4/sub-BEACON19_ses-4_AMY_bil.nii.gz \
-dset 2 2 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-4/sub-BEACON21_ses-4_AMY_bil.nii.gz \
-dset 2 2 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-4/sub-BEACON23_ses-4_AMY_bil.nii.gz \
-dset 2 3 1 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON02/ses-2/sub-BEACON02_ses-2_AMY_bil.nii.gz \
-dset 2 3 2 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON03/ses-2/sub-BEACON03_ses-2_AMY_bil.nii.gz \
-dset 2 3 3 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON04/ses-2/sub-BEACON04_ses-2_AMY_bil.nii.gz \
-dset 2 3 4 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON06/ses-2/sub-BEACON06_ses-2_AMY_bil.nii.gz \
-dset 2 3 5 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON07/ses-2/sub-BEACON07_ses-2_AMY_bil.nii.gz \
-dset 2 3 6 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON08/ses-2/sub-BEACON08_ses-2_AMY_bil.nii.gz \
-dset 2 3 7 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON09/ses-2/sub-BEACON09_ses-2_AMY_bil.nii.gz \
-dset 2 3 8 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON13/ses-2/sub-BEACON13_ses-2_AMY_bil.nii.gz \
-dset 2 3 9 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON14/ses-2/sub-BEACON14_ses-2_AMY_bil.nii.gz \
-dset 2 3 10 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON15/ses-2/sub-BEACON15_ses-2_AMY_bil.nii.gz \
-dset 2 3 11 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON16/ses-2/sub-BEACON16_ses-2_AMY_bil.nii.gz \
-dset 2 3 12 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON18/ses-2/sub-BEACON18_ses-2_AMY_bil.nii.gz \
-dset 2 3 13 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON19/ses-2/sub-BEACON19_ses-2_AMY_bil.nii.gz \
-dset 2 3 14 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON21/ses-2/sub-BEACON21_ses-2_AMY_bil.nii.gz \
-dset 2 3 15 /media/fmrilab/Storage11/BEACON/Marvin/ICA_CompCor_smoothed/sub-BEACON23/ses-2/sub-BEACON23_ses-2_AMY_bil.nii.gz \
-fa time \
-fb condition \
-fab time*cond \
-adiff 1 2 prevspost \
-bdiff 1 2 contvsL \
-bdiff 1 3 contvsH \
-bdiff 2 3 lvsH \
-bcontr -0.5 1 -0.5 LvscontH \
-bcontr 1 -0.5 -0.5 contvsLH \
-aBcontr 1 -1 : 1 precontvspostcont \
-aBcontr 1 -1 : 2 prelowvspostlow \
-aBcontr 1 -1 : 3 prehighvsposthigh \
-bucket BEACON_anova
another one is 3dMVM as given below:
3dMVM -prefix BEACON_MVM -jobs 12 \
-mask myMask+tlrc \
-bsVars 1 \
-wsVars 'condition*Time' \
-num_glt 9 \
-SC \
-gltLabel 1 control_t0 -gltCode 1 'condition : 1*cont Time : 1*0' \
-gltLabel 2 control_t1 -gltCode 2 'condition : 1*cont Time : 1*1' \
-gltLabel 3 low_t0 -gltCode 3 'condition : 1*low Time : 1*0' \
-gltLabel 4 low_t1 -gltCode 4 'condition : 1*low Time : 1*1' \
-gltLabel 5 high_t0 -gltCode 5 'condition : 1*high Time : 1*0' \
-gltLabel 6 high_t1 -gltCode 6 'condition : 1*high Time : 1*1' \
-gltLabel 7 control_vs_low_t0 -gltCode 7 'condition : 1*cont -1*low Time : 1*1 -1*0' \
-gltLabel 8 control_vs_high_t0 -gltCode 8 'condition : 1*cont -1*high Time : 1*1 -1*0' \
-gltLabel 9 low_vs_high_t0 -gltCode 9 'condition : 1*low -1*high Time : 1*1 -1*0' \
-dataTable @input_BEACON_AMY_both.txt \
Please have a look at both scripts and help me in acheiving my aim.
Best wishes,
~007
| Subject | Author | Posted |
|---|---|---|
|
AFNIuser007 | December 30, 2021 02:34PM |
|
gang | December 30, 2021 11:36PM |
