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April 08, 2022 12:12PM
Thank you for the fast reply, Gang.

I was able to start this script:

3dMVM -prefix SentenceWordVol -jobs 4 \
-bsVars 'group' \
-wsVars 'condition*noisy' \
-num_glt 9 \
-SC \
-gltLabel 1 A_btngrp -gltCode 1 'group : 1*sentence -1*word condition : 1*A' \
-gltLabel 2 AV_btngrp -gltCode 2 'group : 1*sentence -1*word condition : 1*AV' \
-gltLabel 3 V_btngrp -gltCode 3 'group : 1*sentence -1*word condition : 1*V' \
-gltLabel 4 An_btngrp -gltCode 4 'group : 1*sentence -1*word condition : 1*A noisy : 1*yes' \
-gltLabel 5 Ac_btngrp -gltCode 5 'group : 1*sentence -1*word condition : 1*A noisy : 1*no' \
-gltLabel 6 AnV_btngrp -gltCode 6 'group : 1*sentence -1*word condition : 1*AV noisy : 1*yes' \
-gltLabel 7 AcV_btngrp -gltCode 7 'group : 1*sentence -1*word condition : 1*AV noisy : 1*no' \
-gltLabel 8 A_AV_by_group -gltCode 8 'group : 1*sentence -1*word condition : 1*A -1*AV' \
-gltLabel 9 diff_of_diff -gltCode 9 'group : 1*sentence -1*word condition : 1*A -1*AV noisy : 1*yes -1*no' \
-dataTable @table.txt

After ~10min, I got an error:
~~~~~~~~~~~~~~~~~~~ Model test failed! ~~~~~~~~~~~~~~~~~~~
Possible reasons:

0) Make sure that R packages afex and phia have been installed. See the 3dMVM
help documentation for more details.
....
....
** Error:
Quitting due to model test failure...

I was trying to run: @3dMVM_validator -dataTable ~/table.csv
OR
@3dMVM_validator -dataTable ~/table.txt
Got the error: @3dMVM_validator: Command not found.

I definitely have the R packages installed.
And my table.txt looks like this:

Subj group condition noisy InputFile \
QO sentence A no stats.QO+tlrc[1] \
QO sentence V no stats.QO+tlrc[4] \
QO sentence AV no stats.QO+tlrc[7] \
QO sentence A yes stats.QO+tlrc[10] \
QO sentence AV yes stats.QO+tlrc[13] \
QP sentence A no stats.QP+tlrc[1] \
QP sentence V no stats.QP+tlrc[4] \
QP sentence AV no stats.QP+tlrc[7] \
QP sentence A yes stats.QP+tlrc[10] \
QP sentence AV yes stats.QP+tlrc[13] \
QQ sentence A no stats.QQ+tlrc[1] \
QQ sentence V no stats.QQ+tlrc[4] \
QQ sentence AV no stats.QQ+tlrc[7] \
QQ sentence A yes stats.QQ+tlrc[10] \
QQ sentence AV yes stats.QQ+tlrc[13] \
QR sentence A no stats.QR+tlrc[1] \
QR sentence V no stats.QR+tlrc[4] \
QR sentence AV no stats.QR+tlrc[7] \
QR sentence A yes stats.QR+tlrc[10] \
QR sentence AV yes stats.QR+tlrc[13] \
QS sentence A no stats.QS+tlrc[1] \
QS sentence V no stats.QS+tlrc[4] \
QS sentence AV no stats.QS+tlrc[7] \
QS sentence A yes stats.QS+tlrc[10] \
QS sentence AV yes stats.QS+tlrc[13] \
QT sentence A no stats.QT+tlrc[1] \
QT sentence V no stats.QT+tlrc[4] \
QT sentence AV no stats.QT+tlrc[7] \
QT sentence A yes stats.QT+tlrc[10] \
QT sentence AV yes stats.QT+tlrc[13] \
QU sentence A no stats.QU+tlrc[1] \
QU sentence V no stats.QU+tlrc[4] \
QU sentence AV no stats.QU+tlrc[7] \
QU sentence A yes stats.QU+tlrc[10] \
QU sentence AV yes stats.QU+tlrc[13] \
QV sentence A no stats.QV+tlrc[1] \
QV sentence V no stats.QV+tlrc[4] \
QV sentence AV no stats.QV+tlrc[7] \
QV sentence A yes stats.QV+tlrc[10] \
QV sentence AV yes stats.QV+tlrc[13] \
QW sentence A no stats.QW+tlrc[1] \
QW sentence V no stats.QW+tlrc[4] \
QW sentence AV no stats.QW+tlrc[7] \
QW sentence A yes stats.QW+tlrc[10] \
QW sentence AV yes stats.QW+tlrc[13] \
QX sentence A no stats.QX+tlrc[1] \
QX sentence V no stats.QX+tlrc[4] \
QX sentence AV no stats.QX+tlrc[7] \
QX sentence A yes stats.QX+tlrc[10] \
QX sentence AV yes stats.QX+tlrc[13] \
QY sentence A no stats.QY+tlrc[1] \
QY sentence V no stats.QY+tlrc[4] \
QY sentence AV no stats.QY+tlrc[7] \
QY sentence A yes stats.QY+tlrc[10] \
QY sentence AV yes stats.QY+tlrc[13] \
QZ sentence A no stats.QZ+tlrc[1] \
QZ sentence V no stats.QZ+tlrc[4] \
QZ sentence AV no stats.QZ+tlrc[7] \
QZ sentence A yes stats.QZ+tlrc[10] \
QZ sentence AV yes stats.QZ+tlrc[13] \
RA sentence A no stats.RA+tlrc[1] \
RA sentence V no stats.RA+tlrc[4] \
RA sentence AV no stats.RA+tlrc[7] \
RA sentence A yes stats.RA+tlrc[10] \
RA sentence AV yes stats.RA+tlrc[13] \
RB sentence A no stats.RB+tlrc[1] \
RB sentence V no stats.RB+tlrc[4] \
RB sentence AV no stats.RB+tlrc[7] \
RB sentence A yes stats.RB+tlrc[10] \
RB sentence AV yes stats.RB+tlrc[13] \
RC sentence A no stats.RC+tlrc[1] \
RC sentence V no stats.RC+tlrc[4] \
RC sentence AV no stats.RC+tlrc[7] \
RC sentence A yes stats.RC+tlrc[10] \
RC sentence AV yes stats.RC+tlrc[13] \
RD sentence A no stats.RD+tlrc[1] \
RD sentence V no stats.RD+tlrc[4] \
RD sentence AV no stats.RD+tlrc[7] \
RD sentence A yes stats.RD+tlrc[10] \
RD sentence AV yes stats.RD+tlrc[13] \
RE sentence A no stats.RE+tlrc[1] \
RE sentence V no stats.RE+tlrc[4] \
RE sentence AV no stats.RE+tlrc[7] \
RE sentence A yes stats.RE+tlrc[10] \
RE sentence AV yes stats.RE+tlrc[13] \
RF sentence A no stats.RF+tlrc[1] \
RF sentence V no stats.RF+tlrc[4] \
RF sentence AV no stats.RF+tlrc[7] \
RF sentence A yes stats.RF+tlrc[10] \
RF sentence AV yes stats.RF+tlrc[13] \
RG sentence A no stats.RG+tlrc[1] \
RG sentence V no stats.RG+tlrc[4] \
RG sentence AV no stats.RG+tlrc[7] \
RG sentence A yes stats.RG+tlrc[10] \
RG sentence AV yes stats.RG+tlrc[13] \
RH sentence A no stats.RH+tlrc[1] \
RH sentence V no stats.RH+tlrc[4] \
RH sentence AV no stats.RH+tlrc[7] \
RH sentence A yes stats.RH+tlrc[10] \
RH sentence AV yes stats.RH+tlrc[13] \
RI sentence A no stats.RI+tlrc[1] \
RI sentence V no stats.RI+tlrc[4] \
RI sentence AV no stats.RI+tlrc[7] \
RI sentence A yes stats.RI+tlrc[10] \
RI sentence AV yes stats.RI+tlrc[13] \
RJ sentence A no stats.RJ+tlrc[1] \
RJ sentence V no stats.RJ+tlrc[4] \
RJ sentence AV no stats.RJ+tlrc[7] \
RJ sentence A yes stats.RJ+tlrc[10] \
RJ sentence AV yes stats.RJ+tlrc[13] \
RX word A yes stats.RX+tlrc[1] \
RX word A no stats.RX+tlrc[4] \
RX word V no stats.RX+tlrc[7] \
RX word AV yes stats.RX+tlrc[10] \
RX word AV no stats.RX+tlrc[13] \
RY word A yes stats.RY+tlrc[1] \
RY word A no stats.RY+tlrc[4] \
RY word V no stats.RY+tlrc[7] \
RY word AV yes stats.RY+tlrc[10] \
RY word AV no stats.RY+tlrc[13] \
RZ word A yes stats.RZ+tlrc[1] \
RZ word A no stats.RZ+tlrc[4] \
RZ word V no stats.RZ+tlrc[7] \
RZ word AV yes stats.RZ+tlrc[10] \
RZ word AV no stats.RZ+tlrc[13] \
SA word A yes stats.SA+tlrc[1] \
SA word A no stats.SA+tlrc[4] \
SA word V no stats.SA+tlrc[7] \
SA word AV yes stats.SA+tlrc[10] \
SA word AV no stats.SA+tlrc[13] \
SB word A yes stats.SB+tlrc[1] \
SB word A no stats.SB+tlrc[4] \
SB word V no stats.SB+tlrc[7] \
SB word AV yes stats.SB+tlrc[10] \
SB word AV no stats.SB+tlrc[13] \
SC word A yes stats.SC+tlrc[1] \
SC word A no stats.SC+tlrc[4] \
SC word V no stats.SC+tlrc[7] \
SC word AV yes stats.SC+tlrc[10] \
SC word AV no stats.SC+tlrc[13] \
SD word A yes stats.SD+tlrc[1] \
SD word A no stats.SD+tlrc[4] \
SD word V no stats.SD+tlrc[7] \
SD word AV yes stats.SD+tlrc[10] \
SD word AV no stats.SD+tlrc[13] \
SE word A yes stats.SE+tlrc[1] \
SE word A no stats.SE+tlrc[4] \
SE word V no stats.SE+tlrc[7] \
SE word AV yes stats.SE+tlrc[10] \
SE word AV no stats.SE+tlrc[13] \
SF word A yes stats.SF+tlrc[1] \
SF word A no stats.SF+tlrc[4] \
SF word V no stats.SF+tlrc[7] \
SF word AV yes stats.SF+tlrc[10] \
SF word AV no stats.SF+tlrc[13] \
SG word A yes stats.SG+tlrc[1] \
SG word A no stats.SG+tlrc[4] \
SG word V no stats.SG+tlrc[7] \
SG word AV yes stats.SG+tlrc[10] \
SG word AV no stats.SG+tlrc[13] \
SH word A yes stats.SH+tlrc[1] \
SH word A no stats.SH+tlrc[4] \
SH word V no stats.SH+tlrc[7] \
SH word AV yes stats.SH+tlrc[10] \
SH word AV no stats.SH+tlrc[13] \
SI word A yes stats.SI+tlrc[1] \
SI word A no stats.SI+tlrc[4] \
SI word V no stats.SI+tlrc[7] \
SI word AV yes stats.SI+tlrc[10] \
SI word AV no stats.SI+tlrc[13] \
SJ word A yes stats.SJ+tlrc[1] \
SJ word A no stats.SJ+tlrc[4] \
SJ word V no stats.SJ+tlrc[7] \
SJ word AV yes stats.SJ+tlrc[10] \
SJ word AV no stats.SJ+tlrc[13] \
SK word A yes stats.SK+tlrc[1] \
SK word A no stats.SK+tlrc[4] \
SK word V no stats.SK+tlrc[7] \
SK word AV yes stats.SK+tlrc[10] \
SK word AV no stats.SK+tlrc[13] \
SL word A yes stats.SL+tlrc[1] \
SL word A no stats.SL+tlrc[4] \
SL word V no stats.SL+tlrc[7] \
SL word AV yes stats.SL+tlrc[10] \
SL word AV no stats.SL+tlrc[13]


Sorry for this long message, but I was not able to spot any mistake in my script or table, could you please help?

Thank you so much!


Yue
Subject Author Posted

2-group comparison using AFNI

yue1988 April 04, 2022 04:28PM

Re: 2-group comparison using AFNI

Gang April 05, 2022 10:31PM

Re: 2-group comparison using AFNI

yue1988 April 07, 2022 12:19PM

Re: 2-group comparison using AFNI

Gang April 07, 2022 11:12PM

Re: 2-group comparison using AFNI

yue1988 April 08, 2022 12:12PM

Re: 2-group comparison using AFNI

Gang April 09, 2022 12:05PM

Re: 2-group comparison using AFNI

yue1988 April 11, 2022 08:57AM

Re: 2-group comparison using AFNI

Gang April 11, 2022 02:40PM

Re: 2-group comparison using AFNI

yue1988 April 11, 2022 08:08PM



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