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April 10, 2022 05:41AM
Dear AFNI experts,

I was using 3dAutomask to get the mask of brain from the epi dataset. I met the problem that some of the skull was included in the mask. Is this acceptable? I'm not sure if the later analysis would be affected if I use this mask. And is there some way to have a cleaner mask?

Many thanks,
Dong


Subject Author Posted

Get the brain mask using 3dAutomask Attachments

Dong April 10, 2022 05:41AM

Re: Get the brain mask using 3dAutomask

ptaylor April 11, 2022 10:46AM

Re: Get the brain mask using 3dAutomask

Daniel Glen April 11, 2022 01:13PM

Re: Get the brain mask using 3dAutomask

RWCox April 12, 2022 04:33PM



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