AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 12, 2022 04:33PM
If you are dealing with human brain images, and are willing to run somewhat longer CPU times, then the @SSwarper script with the "-skipwarp" option might be best -- as a preprocessor. Then run 3dAutomask on the anatSS.SUBJECT-ID.nii output.
Subject Author Posted

Get the brain mask using 3dAutomask Attachments

Dong April 10, 2022 05:41AM

Re: Get the brain mask using 3dAutomask

ptaylor April 11, 2022 10:46AM

Re: Get the brain mask using 3dAutomask

Daniel Glen April 11, 2022 01:13PM

Re: Get the brain mask using 3dAutomask

RWCox April 12, 2022 04:33PM