Perhaps that's part of the issue. The group dataset I'm trying to visualize seems misaligned to the HaskinsPeds T1.nii and *.spec file. Maybe the group data needs to be regrided?
I'm visualizing using AFNI+SUMA:
afni -niml &
suma -spec ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/std.141.HaskinPeds_both.spec -sv ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/T1_new.nii &
*Press "t" to get AFNI & SUMA to talk...
NOTE: T1_new.nii is the output from
3drefit -space HaskinsPeds ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/T1.nii
I've attached a few screenshots to visualize the misalignment.
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Screen Shot 2022-04-13 at 9.34.37 AM.png
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Screen Shot 2022-04-13 at 9.34.41 AM.png
(247.6 KB)
