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April 15, 2022 09:50PM
I can't quite see the full command, so I'll try to guess. If there is no master dataset, 3dUndump interprets the xyz coordinates in the input file as RAI (Right to left, Anterior to posterior, Inferior to superior). Otherwise, the xyz order matches the master dataset. It might be the text file you are using assumes the order of the master dataset. Instead of using xyz order, if you use the ijk definition for the coordinates (0 to n-1 columns, 0 to m-1 rows, 0 to k-1 slices), the storage order and direction of the master dataset would be assumed. Still 3dUndump may not even be the best way to get your data into an AFNI or NIFTI format. If you have binary data, you could use something like to3d. In any case, if this doesn't work, send some datasets, and Pete Molfese or I will take a look.



Edited 2 time(s). Last edit at 04/19/2022 06:27PM by Daniel Glen.
Subject Author Posted

HaskinsPed .spec file for SUMA

aclynn11 April 11, 2022 04:29PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 11, 2022 05:01PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 12, 2022 02:30PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 12, 2022 07:35PM

Re: HaskinsPed .spec file for SUMA Attachments

aclynn11 April 13, 2022 10:35AM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 13, 2022 01:52PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 13, 2022 02:16PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 13, 2022 02:26PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 15, 2022 09:50PM

Re: HaskinsPed .spec file for SUMA Attachments

aclynn11 April 19, 2022 03:31PM



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