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April 15, 2022 11:50PM
Hi, Pawel-

I see you are selecting "ARM Level 3" in your selection, but the parenthetical is "(sb0)", which means "sub-brick 0". Did you splice the dataset?

When I run:
whereami -atlas 'ARM' -omask Clust_mask_0001+tlrc > asdf
.... with the data you provided, this is what I get for sub-brick 2 (sb2) information, which corresponds to Level 3 (because subbricks are zero-based counting):
Intersection of ROI (valued 1) with atlas ARM (sb2):
   45.2 % overlap with CR_dlPFC
[CR_dorsolateral_prefrontal_cortex], code 554
   34.8 % overlap with CR_ACC
[CR_anterior_cingulate_cortex], code 503
   11.1 % overlap with CR_SMA/preSMA
[CR_medial_supplementary_motor_areas], code 587
   4.6  % overlap with CR_MCC
[CR_midcingulate_cortex], code 511
   3.1  % overlap with CR_vlPFC
[CR_ventrolateral_prefrontal_cortex], code 564
   0.1  % overlap with CR_med_OFC
[CR_medial_orbital_frontal_cortex], code 517
   -----
   98.9 % of cluster accounted for.
This whereami output seems consistent with what you did in Matlab.

So, perhaps the question is what happened to the ARM dataset before you ran whereami?

--pt
Subject Author Posted

HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 13, 2022 08:33PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 14, 2022 09:08AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 14, 2022 11:11AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 14, 2022 11:17AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 14, 2022 11:23AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 14, 2022 01:50PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 14, 2022 01:56PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 14, 2022 02:07PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 14, 2022 02:32PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 14, 2022 03:51PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 14, 2022 04:09PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Daniel Glen April 15, 2022 10:19PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 15, 2022 11:01PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 15, 2022 11:50PM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 16, 2022 01:14AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

ptaylor April 16, 2022 07:38AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Pawel April 16, 2022 11:22AM

Re: HEAD/BRIK into Matlab (or how to check ROIs against atlas)

Daniel Glen April 17, 2022 10:43PM



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