Hey,
I'm trying to invoke afni using the -bysub argument to read in a bids dataset of my creation.
I'm running afni as follows
afni -bysub sub-117 - ./
In this case ./ contains the derivative/sub-XXX/ses-YYY/{anat,func}/sub-xxx_ses-YYY_{T1w,task-rs_bold}.nii.gz files.
Afni complains as follows and only shows the MNI brain with apparently no datasets read in:
$ afni -bysub sub-117 - ./
** AFNI terminates: I am not a number-- I am a free program!! [787/895]
Precompiled binary linux_ubuntu_16_64: Apr 14 2022 (Version AFNI_22.1.03 'Antoninus Pius')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to S Amara for much encouragement
Initializing: X11[The X.Org Foundation v 12013000].. Widgets...... Input files:[bysub/BIDS]find: warning: you have specified the global option -depth after the argument -type, but global options are not positional, i.e., -depth affects tests specified before it as well as those specified after it. Please specify global options before other arguments.
find: unknown predicate `-9'
** No datasets found -- making up something **
Timeseries.1D = 0 files read
.[tc]sv data = 0 files read
Path(s) to be searched for plugins:
/opt/mri_software/linux_ubuntu_16_64 /opt/mri_software/linux_ubuntu_16_64/../lib
Plugins = 50 libraries read
write compress= GZIP
There appears to be a problem with the construction of the find command invoked by afni.
I'm running afni on:
Distributor ID: Ubuntu
Description: Ubuntu 20.04.4 LTS
Release: 20.04
Codename: focal
