AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 23, 2022 07:56PM
Hi all,
I compiled afni/suma on a MacBook Pro with an M1. AFNI works well, but SUMA is crashing non-trivially. Crash log attached.
It seems like there may be an issue with a UI event call?
I was running ./suma in a directory without any surface files, expecting for the toy surfaces to load.

Here's the output of otool -L (Mac equivalent of ldd):
suma:
/opt/homebrew/opt/openmotif/lib/libXm.4.dylib (compatibility version 5.0.0, current version 5.4.0)
/opt/homebrew/opt/jpeg/lib/libjpeg.9.dylib (compatibility version 14.0.0, current version 14.0.0)
/opt/X11/lib/libXt.6.dylib (compatibility version 7.0.0, current version 7.0.0)
/opt/X11/lib/libXft.2.dylib (compatibility version 6.0.0, current version 6.3.0)
/opt/X11/lib/libfontconfig.1.dylib (compatibility version 14.0.0, current version 14.0.0)
/opt/X11/lib/libpng16.16.dylib (compatibility version 55.0.0, current version 55.0.0)
/usr/lib/libiconv.2.dylib (compatibility version 7.0.0, current version 7.0.0)
/opt/X11/lib/libXmu.6.dylib (compatibility version 9.0.0, current version 9.0.0)
/opt/homebrew/opt/libxp/lib/libXp.6.dylib (compatibility version 9.0.0, current version 9.0.0)
/opt/X11/lib/libXpm.4.dylib (compatibility version 16.0.0, current version 16.0.0)
/opt/X11/lib/libXext.6.dylib (compatibility version 11.0.0, current version 11.0.0)
/opt/X11/lib/libX11.6.dylib (compatibility version 11.0.0, current version 11.0.0)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)
/usr/lib/libexpat.1.dylib (compatibility version 7.0.0, current version 8.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1311.0.0)
/opt/X11/lib/libGLU.1.dylib (compatibility version 5.0.0, current version 5.1.0)
/opt/X11/lib/libGL.1.dylib (compatibility version 4.0.0, current version 4.0.0)
/opt/homebrew/opt/glib/lib/libglib-2.0.0.dylib (compatibility version 7001.0.0, current version 7001.2.0)
/opt/homebrew/opt/gcc/lib/gcc/11/libgcc_s.1.1.dylib (compatibility version 1.0.0, current version 1.1.0)



*********------ CRASH LOG ------------------------------***********
Fatal Signal 11 (SIGSEGV) received
.......... recent internal history .........................................
----SUMA_DimSclFac [4]: EXIT} (file=SUMA_SVmanip.c line=48) to SUMA_Alloc_SurfaceViewer_Struct {176 ms}
++++SUMA_Alloc_Axis [4]: {ENTRY (file=SUMA_CreateDO.c line=5090) from SUMA_Alloc_SurfaceViewer_Struct {176 ms}
----SUMA_Alloc_Axis [4]: EXIT} (file=SUMA_CreateDO.c line=5140) to SUMA_Alloc_SurfaceViewer_Struct {176 ms}
++++SUMA_Alloc_CrossHair [4]: {ENTRY (file=SUMA_CreateDO.c line=16774) from SUMA_Alloc_SurfaceViewer_Struct {176 ms}
+++++SUMA_DimSclFac [5]: {ENTRY (file=SUMA_SVmanip.c line=23) from SUMA_Alloc_CrossHair {176 ms}
++++++SUMA_EnvVal [6]: {ENTRY (file=suma_utils.c line=3499) from SUMA_DimSclFac {176 ms}
------SUMA_EnvVal [6]: EXIT} (file=suma_utils.c line=3509) to SUMA_DimSclFac {176 ms}
-----SUMA_DimSclFac [5]: EXIT} (file=SUMA_SVmanip.c line=48) to SUMA_Alloc_CrossHair {176 ms}
+++++SUMA_DimSclFac [5]: {ENTRY (file=SUMA_SVmanip.c line=23) from SUMA_Alloc_CrossHair {176 ms}
++++++SUMA_EnvVal [6]: {ENTRY (file=suma_utils.c line=3499) from SUMA_DimSclFac {176 ms}
------SUMA_EnvVal [6]: EXIT} (file=suma_utils.c line=3509) to SUMA_DimSclFac {176 ms}
-----SUMA_DimSclFac [5]: EXIT} (file=SUMA_SVmanip.c line=48) to SUMA_Alloc_CrossHair {176 ms}
+++++SUMA_DimSclFac [5]: {ENTRY (file=SUMA_SVmanip.c line=23) from SUMA_Alloc_CrossHair {176 ms}
++++++SUMA_EnvVal [6]: {ENTRY (file=suma_utils.c line=3499) from SUMA_DimSclFac {176 ms}
------SUMA_EnvVal [6]: EXIT} (file=suma_utils.c line=3509) to SUMA_DimSclFac {176 ms}
-----SUMA_DimSclFac [5]: EXIT} (file=SUMA_SVmanip.c line=48) to SUMA_Alloc_CrossHair {176 ms}
----SUMA_Alloc_CrossHair [4]: EXIT} (file=SUMA_CreateDO.c line=16840) to SUMA_Alloc_SurfaceViewer_Struct {176 ms}
++++SUMA_AdoptGroup [4]: {ENTRY (file=SUMA_SVmanip.c line=5501) from SUMA_Alloc_SurfaceViewer_Struct {176 ms}
+++++SUMA_WhichGroup [5]: {ENTRY (file=SUMA_SVmanip.c line=6116) from SUMA_AdoptGroup {176 ms}
-----SUMA_WhichGroup [5]: EXIT} (file=SUMA_SVmanip.c line=6127) to SUMA_AdoptGroup {176 ms}
+++++SUMA_copy_string [5]: {ENTRY (file=suma_utils.c line=2543) from SUMA_AdoptGroup {176 ms}
-----SUMA_copy_string [5]: EXIT} (file=suma_utils.c line=2556) to SUMA_AdoptGroup {176 ms}
----SUMA_AdoptGroup [4]: EXIT} (file=SUMA_SVmanip.c line=5511) to SUMA_Alloc_SurfaceViewer_Struct {176 ms}
++++SUMA_SetObjectDisplayOrder [4]: {ENTRY (file=SUMA_SVmanip.c line=468) from SUMA_Alloc_SurfaceViewer_Struct {176 ms}
----SUMA_SetObjectDisplayOrder [4]: EXIT} (file=SUMA_SVmanip.c line=479) to SUMA_Alloc_SurfaceViewer_Struct {176 ms}
---SUMA_Alloc_SurfaceViewer_Struct [3]: EXIT} (file=SUMA_SVmanip.c line=1104) to suma {176 ms}
+++SUMA_X_SurfaceViewer_Create [3]: {ENTRY (file=SUMA_display.c line=4213) from suma {176 ms}
++++SUMA_get_fallbackResources [4]: {ENTRY (file=SUMA_display.c line=280) from SUMA_X_SurfaceViewer_Create {176 ms}
----SUMA_get_fallbackResources [4]: EXIT} (file=SUMA_display.c line=287) to SUMA_X_SurfaceViewer_Create {176 ms}
++++SUMA_EnvVal [4]: {ENTRY (file=suma_utils.c line=3499) from SUMA_X_SurfaceViewer_Create {177 ms}
----SUMA_EnvVal [4]: EXIT} (file=suma_utils.c line=3509) to SUMA_X_SurfaceViewer_Create {177 ms}
............................................................................
SUMA_X_SurfaceViewer_Create
suma
** AFNI compile date = Jan 24 2022
** [[Precompiled binary macos_11.3_ARM_M1_clang: Jan 24 2022]]
** Program Crash **

Thank you!
Prantik
Subject Author Posted

suma crash on Monterey/M1

prantikk April 23, 2022 07:56PM

Re: suma crash on Monterey/M1

Daniel Glen April 26, 2022 04:34PM

Re: suma crash on Monterey/M1

rick reynolds April 27, 2022 01:59PM

Re: suma crash on Monterey/M1

prantikk May 03, 2022 09:51AM

Re: suma crash on Monterey/M1

rick reynolds May 03, 2022 10:07AM