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April 29, 2022 08:52AM
Hi, Philipp-

That kind of result for affine allignment isn't so surprising--happy to talk more about nonlinear alignment if you have questions.

Integrating nonlinear alignment with @SSwarper and full FMRI processing with afni_proc.py is probably the most recommended way to go. If you want your final subject data in subject anatomical space for some reason (which is perfectly reasonable!), you can still use afni_proc.py and @SSwarper, just not using the results of the latter in the former directly.

Just let us know what location for "final" data makes most sense, and we can discuss options for processing.

-pt
Subject Author Posted

3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

philippn April 27, 2022 03:58PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

rick reynolds April 27, 2022 04:14PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley Attachments

philippn April 27, 2022 05:14PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

rick reynolds April 27, 2022 05:21PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

ptaylor April 27, 2022 05:24PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

philippn April 27, 2022 06:26PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

ptaylor April 28, 2022 07:29AM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

philippn April 28, 2022 11:35AM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

ptaylor April 28, 2022 12:31PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

philippn April 28, 2022 07:17PM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

ptaylor April 29, 2022 08:52AM

Re: 3dNwarpApply error: Warp dataset 'nwarp native_al_mat.aff12.1D' name is too much like a matrix text file moody smiley

philippn April 29, 2022 04:04PM



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