AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 29, 2022 05:25PM
Hi, Philipp-

Well, I guess I asked for it... Silly me.

In the transformation_steps.jpg image you sent, is Panel A-left really a subject native space thing? It looks like a template.

Just to check about deobliquing, can you generate the following images:
@djunct_overlap_check \
    -ulay orig_T1_UNI-DEN.nii.gz  \
    -olay MNI152_T1_1mm.nii.gz   \
    -prefix olap_t1_mni
and
@djunct_overlap_check \
    -ulay target_native mtc.nii.gz  \
    -olay orig_T1_UNI-DEN.nii.gz  \
    -prefix olap_epi_t1

Each will likely make 2 images (one ignoring obliquity values, and one applying them), and it would be good to see both---because of a quirk of the MB underlying software, this might require 2 replies (because I think the most images that can be uploaded per post is 2).

Let's start there...

--pt
Subject Author Posted

Nonlinear registration for hires slab Attachments

philippn April 29, 2022 11:45AM

Re: Nonlinear registration for hires slab

ptaylor April 29, 2022 05:25PM

Re: Nonlinear registration for hires slab Attachments

philippn April 29, 2022 05:51PM