AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 09, 2022 11:55AM
Hi Philipp,

To be sure, are you really acquiring a single run that is more than an hour long, without any breaks in the scanning?

In such a case, it might be better not to use polor detrending, but rather sinusoid. It might include a similar number of regressors, but be better behaved.

That would be doing bandpassing, but only as a high-pass filter. But since BP does not really account for quadratic trends, also include polort 2. For example, consider something like:

-regress_polort 2         \
-regress_bandpass 0.01 1

Here the upper frequency of 1 could be anything at least as large as your Nyquist frequency of 0.25 Hz.


You would have to verify how many regressors this would end up corresponding to, it might still be similar.


On a separate note, if you want to decrease the RAM needs for this, consider adding -regress_compute_fitts .

- rick
Subject Author Posted

AFNI proc -regress_polort option for very long runs

Philipp May 07, 2022 08:47AM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 11:55AM

Re: AFNI proc -regress_polort option for very long runs

Philipp May 09, 2022 12:32PM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 02:08PM

Re: AFNI proc -regress_polort option for very long runs

Philipp May 09, 2022 02:17PM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 02:39PM

Re: AFNI proc -regress_polort option for very long runs

Philipp May 09, 2022 02:44PM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 02:51PM

Re: AFNI proc -regress_polort option for very long runs

Philipp May 09, 2022 02:58PM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 03:31PM

Re: AFNI proc -regress_polort option for very long runs

Philipp May 09, 2022 03:35PM

Re: AFNI proc -regress_polort option for very long runs

rick reynolds May 09, 2022 04:10PM