AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 10, 2022 07:43AM
thank you ptaylor:
after i make sure that the file pACC.z+tlrc in the right directory. i run the command you suggested above like this:
set dirA = /home/osman/Deneyler
set mask_dset = /home/osman/Deneyler/s01/s01.results/pACC.z+tlrc
gen_group_command.py \
-command 3dttest++ \
-write_script cmd_ttest.tcsh \
-prefix out_ttest \
-dsets $dirA/s01/s01.results/pACC.z+tlrc*HEAD \
-subs_betas '0' \
-options \
-mask ${mask_dset}


this created a script file in the same directory named cmd_ttest.tcsh. whivh content is:
# apply any data directories with variables
set data_dir = /s01/s01.results

3dttest++ \
-prefix out_ttest \
-setA setA \
pACC.z+tlrc*HEAD "$data_dir/pACC.z+tlrc*HEAD[0]" \
-mask


when ı run this script to the terminal i get this error message:

++ 3dttest++: AFNI version=AFNI_22.1.04 (Apr 18 2022) [64-bit]
++ Authored by: Zhark++
++ option -setA :: processing as LONG form (label label dset label dset ...)
*+ WARNING: -setA: LONG form dataset label 'pACC.z+tlrc.HEAD' looks like a dataset name -- is this OK ?!?
** FATAL ERROR: Option -setA: can't open dataset '/pACC.z+tlrc*HEAD[0]'
** Program compile date = Apr 18 2022
Subject Author Posted

3dttest resting-state fmri group analysis

osman May 07, 2022 09:10AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 09, 2022 10:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 09, 2022 11:39AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 07:43AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 10, 2022 09:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 09:26AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:19PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:14PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 03:39PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:57PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 04:07PM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 09:16AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 09:45AM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 10:06AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 10:19AM