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May 10, 2022 07:43AM
thank you ptaylor:
after i make sure that the file pACC.z+tlrc in the right directory. i run the command you suggested above like this:
set dirA = /home/osman/Deneyler
set mask_dset = /home/osman/Deneyler/s01/s01.results/pACC.z+tlrc
gen_group_command.py \
-command 3dttest++ \
-write_script cmd_ttest.tcsh \
-prefix out_ttest \
-dsets $dirA/s01/s01.results/pACC.z+tlrc*HEAD \
-subs_betas '0' \
-options \
-mask ${mask_dset}


this created a script file in the same directory named cmd_ttest.tcsh. whivh content is:
# apply any data directories with variables
set data_dir = /s01/s01.results

3dttest++ \
-prefix out_ttest \
-setA setA \
pACC.z+tlrc*HEAD "$data_dir/pACC.z+tlrc*HEAD[0]" \
-mask


when ı run this script to the terminal i get this error message:

++ 3dttest++: AFNI version=AFNI_22.1.04 (Apr 18 2022) [64-bit]
++ Authored by: Zhark++
++ option -setA :: processing as LONG form (label label dset label dset ...)
*+ WARNING: -setA: LONG form dataset label 'pACC.z+tlrc.HEAD' looks like a dataset name -- is this OK ?!?
** FATAL ERROR: Option -setA: can't open dataset '/pACC.z+tlrc*HEAD[0]'
** Program compile date = Apr 18 2022
Subject Author Posted

3dttest resting-state fmri group analysis

osman May 07, 2022 09:10AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 09, 2022 10:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 09, 2022 11:39AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 07:43AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 10, 2022 09:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 09:26AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:19PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:14PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 03:39PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:57PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 04:07PM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 09:16AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 09:45AM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 10:06AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 10:19AM



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