History of AFNI updates  

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May 12, 2022 09:45AM
To back up a moment, the purpose of gen_group_command.py is to help write the script for 3dttest++ for example, while allowing one to use wildcards to select subject datasets. It has a similar functionality to that of uber_ttest.py, except that it does not have a graphical interface.

Typically, you should not edit it resulting command script (in this case, the script that runs 3dttest++).
We can fix the problems with the 3dttest++ script (the data_dir has been altered, and there is a wildcard character in it), but it is the gen_group_command.py script that should really be fixed, and then it will create the 3dttest++ command script, which you should try not to edit.

The way you are running the 3dttest++ script is good, you can even run the gen_group_command.py script that way. But let's now back up and fix the ggc one.

The gen_group_command.py script seemed okay, except that it selected datasets using:

-dsets $dirA/s01/s01.results/pACC.z+tlrc*HEAD \

But that will not list all datasets, because they are not all in the s01 directory. Try something like:

-dsets $dirA/s*/s*.results/pACC.z+tlrc*HEAD \

- rick
Subject Author Posted

3dttest resting-state fmri group analysis

osman May 07, 2022 09:10AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 09, 2022 10:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 09, 2022 11:39AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 07:43AM

Re: 3dttest resting-state fmri group analysis

ptaylor May 10, 2022 09:14AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 09:26AM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:19PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:14PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 03:39PM

Re: 3dttest resting-state fmri group analysis

osman May 10, 2022 03:57PM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 10, 2022 04:07PM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 09:16AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 09:45AM

Re: 3dttest resting-state fmri group analysis

osman May 12, 2022 10:06AM

Re: 3dttest resting-state fmri group analysis

rick reynolds May 12, 2022 10:19AM



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