AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 17, 2022 08:38PM
Hi Rick,

I wonder if another error message immediately following the afni_python_wrapper.py command is relevant to this stream:
afni_python_wrapper.py -eval data_file_to_json()
gen_ss_review_scripts.py -exit0 -init_uvars_json out.ap_uvars.json -write_uvars_json out.ss_review_uvars.json
** guess tcat: failed to determine subject ID from pb00 files
** failed to guess subject ID
** failed to init basics...

Input to the gen_ss_review_scripts.py, out.ap_uvas.json, has the following contents:
 out_limit      : 0.15
  copy_anat      : sub-0128_ses-01_space-MNI152NLin2009cAsym_desc-preproc_T1w+tlrc.HEAD
  mask_dset      : full_mask.sub0128.CSPLIN+tlrc.HEAD
  ss_review_dset : out.ss_review.sub0128.CSPLIN.txt

The output out.ss_review_uvars.json is not created due to the error.
The pb00 files in the same folder are:
pb00.sub0128.CSPLIN.r01.tcat+tlrc.BRIK	pb00.sub0128.CSPLIN.r02.tcat+tlrc.BRIK
pb00.sub0128.CSPLIN.r01.tcat+tlrc.HEAD	pb00.sub0128.CSPLIN.r02.tcat+tlrc.HEAD

Erik
Subject Author Posted

afni_python_wrapper.py error

audachang May 10, 2022 01:24AM

Re: afni_python_wrapper.py error

rick reynolds May 10, 2022 09:11AM

Re: afni_python_wrapper.py error

audachang May 12, 2022 09:56PM

Re: afni_python_wrapper.py error

rick reynolds May 13, 2022 09:20AM

Re: afni_python_wrapper.py error

audachang May 17, 2022 08:38PM

Re: afni_python_wrapper.py error

rick reynolds May 18, 2022 04:08PM

Re: afni_python_wrapper.py error

audachang May 18, 2022 07:07PM

Re: afni_python_wrapper.py error

rick reynolds May 20, 2022 01:44PM