AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
May 16, 2022 11:15AM
It's hard to tell with only the script. The skullstripping may be part of the problem you're running into, or your anatomical data may have artifacts that limit the alignment. A couple recommendations:

1. Template - use one of the more modern templates instead like the MNI_2009c template. We provide a unifized version you can use with @SSwarper. That program will do the skull stripping for you too.
2. afni_proc.py - use this program to generate a script. It can take the output from @SSwarper as part of its input.
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Subject Author Posted

(slight) misaligment of fMRI image data over TT_icmb452

Nikin Baidar May 12, 2022 05:14AM

Re: (slight) misaligment of fMRI image data over TT_icmb452

Daniel Glen May 16, 2022 11:15AM

Re: (slight) misaligment of fMRI image data over TT_icmb452

rick reynolds May 16, 2022 12:13PM