AFNI Message Board

History of AFNI updates  

|
May 12, 2022 10:52AM
HI Rick,

thanks a lot for your help. I have now run the following

dcm_to_nii_command = sprintf("Dimon -infile_prefix '%s/*.dcm' -ushort2float -use_obl_origin -gert_create_dataset -gert_write_as_nifti -gert_outdir %s -gert_to3d_prefix %s", input_directory_path, ...
output_filepath, ...
output_filename);

however, I can see from the command window that is not doing what I want..please see screenshot attached
Also, I get the some dark spots in random places, sometimes in the middle of the brain, sometimes just outside

Best,
Cecilia


Subject Author Posted

dark spots on undistorted data Attachments

cecistein May 12, 2022 10:31AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 10:39AM

Re: dark spots on undistorted data Attachments

cecistein May 12, 2022 10:52AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 10:58AM

Re: dark spots on undistorted data

cecistein May 12, 2022 11:33AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 11:39AM

Re: dark spots on undistorted data Attachments

cecistein May 12, 2022 12:23PM

Re: dark spots on undistorted data

cecistein May 12, 2022 12:24PM



Sorry, only registered users may post in this forum.

Click here to login